ppiData 0.1.18
Tony Chiang
| Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ppiData | | Last Changed Rev: 2237 / Revision: 2286 | | Last Changed Date: 2013-03-11 21:43:46 -0700 (Mon, 11 Mar 2013) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | [ WARNINGS ] | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/ppiData.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ppiData/DESCRIPTION’ ... OK
* this is package ‘ppiData’ version ‘0.1.18’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘ppiData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘ppiData/R/zzz.R’:
.onLoad has wrong argument list ‘libname, pkgname, where’
Package startup functions should have two arguments with names starting
with ‘lib’ and ‘pkg’, respectively.
See section ‘Good practice’ in ?.onAttach.
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Warning: large data file(s) saved inefficiently:
size ASCII compress
ppipred.rda 896Kb FALSE none
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
Gavin2002BPGraph.rda 17Kb 10Kb xz
Gavin2006BPGraph.rda 50Kb 27Kb bzip2
Hazbun2003BPGraph.rda 20Kb 8Kb xz
Ho2002BPGraph.rda 19Kb 9Kb xz
Ito2001BPGraph.rda 33Kb 15Kb xz
ItoFull2001BPGraph.rda 33Kb 15Kb xz
Krogan2006BPGraph.rda 151Kb 84Kb bzip2
intActPPIData.rda 114Kb 63Kb xz
ppipred.rda 896Kb 86Kb xz
sWAC2Sys.rda 35Kb 18Kb xz
stochasticBaits.rda 31Kb 20Kb bzip2
tableList.rda 2.0Mb 783Kb xz
twTableAPMS.rda 24Kb 15Kb bzip2
viableBaits.rda 22Kb 14Kb xz
viablePrey.rda 47Kb 30Kb bzip2
y2h.rda 76Kb 47Kb bzip2
y2hSysGW.rda 71Kb 44Kb bzip2
* checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
‘ppiData.tex’
Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
collectIntactPPIData 14.692 0.172 14.922
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... WARNING
Package vignette(s) without corresponding PDF:
‘ppiData.Rnw’
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There were 2 warnings.
NOTE: There were 3 notes.
See
‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/ppiData.Rcheck/00check.log’
for details.
* installing *source* package ‘ppiData’ ...
** R
** data
** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
‘ppiData.Rnw’
** testing if installed package can be loaded
*** Deprecation warning ***:
The package 'ppiData' is deprecated and will not be supported after Bioconductor release 2.11
* DONE (ppiData)