BioC 2.12: BUILD report for EBcoexpress on george2

* checking for file ‘EBcoexpress/DESCRIPTION’ ... OK
* preparing ‘EBcoexpress’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: EBarrays
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:stats’:

    xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, as.data.frame, cbind, colnames,
    duplicated, eval, get, intersect, lapply, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rep.int, rownames, sapply,
    setdiff, sort, table, tapply, union, unique,
    unlist

Welcome to Bioconductor

    Vignettes contain introductory material; view
    with ‘browseVignettes()’. To cite Bioconductor,
    see ‘citation("Biobase")’, and for packages
    ‘citation("pkgname")’.

Loading required package: lattice
Loading required package: mclust
Package ‘mclust’ version 4.0
Loading required package: minqa
Loading required package: Rcpp

Attaching package: ‘EBcoexpress’

The following object is masked from ‘package:EBarrays’:

    crit.fun


 *** caught segfault ***
address (nil), cause ‘memory not mapped’

Traceback:
 1: .Call(bobyqa_cpp, par, lower, upper, ctrl, fn1)
 2: bobyqa(theta, theGLik, lower = lowlim, upper = uplim, control = con)
 3: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
 4: suppressWarnings(bobyqa(theta, theGLik, lower = lowlim, upper = uplim,     control = con))
 5: ebCoexpressOneStep(D, tinyCond, tinyPat, initHP)
 6: eval(expr, envir, enclos)
 7: eval(expr, .GlobalEnv)
 8: withVisible(eval(expr, .GlobalEnv))
 9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))             call <- sys.call(-4L)        dcall <- deparse(call)[1L]        prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        msg <- conditionMessage(e)        sm <- strsplit(msg, "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],                 type = "b")        if (w > LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")    .Internal(seterrmessage(msg[1L]))    if (!silent && identical(getOption("show.error.messages"),         TRUE)) {        cat(msg, file = stderr())        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error", condition = e))})
13: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
14: evalFunc(ce, options)
15: driver$runcode(drobj, chunk, chunkopts)
16: utils::Sweave(...)
17: engine$weave(file, quiet = quiet)
18: doTryCatch(return(expr), name, parentenv, handler)
19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
20: tryCatchList(expr, classes, parentenv, handlers)
21: tryCatch({    engine$weave(file, quiet = quiet)    find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) {    stop(gettextf("processing vignette ‘%s’ failed with diagnostics:\n%s",         file, conditionMessage(e)), domain = NA, call. = FALSE)})
22: tools::buildVignettes(dir = ".", tangle = FALSE)
aborting ...
Segmentation fault (core dumped)
Summary

Command output
