Package: inSilicoMerging

Version: 1.3.1

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings inSilicoMerging_1.3.1.tar.gz

StartedAt: 2013-03-25 02:32:20 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 02:36:48 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 267.9 seconds

RetCode: 0

Status:  OK

CheckDir: inSilicoMerging.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/inSilicoMerging.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘inSilicoMerging/DESCRIPTION’ ... OK
* this is package ‘inSilicoMerging’ version ‘1.3.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘inSilicoMerging’ can be installed ... [15s/15s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [92s/107s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
plotMDS             49.611  0.216  51.786
plotRLE             14.113  0.512  16.190
plotGeneWiseBoxPlot 12.413  0.400  14.538
merge                7.484  0.636  17.001
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘inSilicoMerging_unit_tests.R’ [16s/33s]
 [16s/34s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘inSilicoMerging’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘inSilicoMerging.Rnw’ 
** testing if installed package can be loaded
* DONE (inSilicoMerging)

name	user	system	elapsed
merge	7.484	0.636	17.001
plotGeneWiseBoxPlot	12.413	0.400	14.538
plotMDS	49.611	0.216	51.786
plotRLE	14.113	0.512	16.190