BioC 2.12: CHECK report for CoCiteStats on petty

Package: CoCiteStats

Version: 1.32.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch CoCiteStats_1.32.0.tar.gz

StartedAt: 2013-10-08 22:03:51 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 22:10:48 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 417.4 seconds

RetCode: 0

Status:  OK

CheckDir: CoCiteStats.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/CoCiteStats.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'CoCiteStats/DESCRIPTION' ... OK
* this is package 'CoCiteStats' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'CoCiteStats' can be installed ... [14s/14s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [278s/281s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
actorAdjTable            54.137  0.951  55.893
gene.geneslist.sig       48.262  1.683  50.602
gene.geneslist.statistic 34.573  0.638  35.459
twowayTable              33.981  0.511  34.825
gene.gene.statistic      32.708  0.522  33.759
twTStats                 31.438  0.546  32.401
paperLen                 29.645  0.510  30.603
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/CoCiteStats.Rcheck/00check.log'
for details.

* installing *source* package 'CoCiteStats' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (CoCiteStats)

name	user	system	elapsed
actorAdjTable	54.137	0.951	55.893
gene.gene.statistic	32.708	0.522	33.759
gene.geneslist.sig	48.262	1.683	50.602
gene.geneslist.statistic	34.573	0.638	35.459
paperLen	29.645	0.510	30.603
twTStats	31.438	0.546	32.401
twowayTable	33.981	0.511	34.825