Package: DEDS

Version: 1.34.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DEDS_1.34.0.tar.gz

StartedAt: 2013-05-01 04:24:49 -0700 (Wed, 01 May 2013)

EndedAt: 2013-05-01 04:25:44 -0700 (Wed, 01 May 2013)

EllapsedTime: 54.8 seconds

RetCode: 0

Status:  OK

CheckDir: DEDS.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/DEDS.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DEDS/DESCRIPTION' ... OK
* this is package 'DEDS' version '1.34.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DEDS' can be installed ... [3s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
deds.stat.linkC: warning in matrix(res$t, byrow = FALSE, nc = newX$nT):
  partial argument match of 'nc' to 'ncol'
sam.multiclass.func: warning in matrix(nr = nrow(X), nc = B): partial
  argument match of 'nr' to 'nrow'
sam.multiclass.func: warning in matrix(nr = nrow(X), nc = B): partial
  argument match of 'nc' to 'ncol'
sam.oneclass.func: warning in matrix(nr = nrow(X), nc = B): partial
  argument match of 'nr' to 'nrow'
sam.oneclass.func: warning in matrix(nr = nrow(X), nc = B): partial
  argument match of 'nc' to 'ncol'
sam.twoclass.func: warning in matrix(nr = nrow(X), nc = B): partial
  argument match of 'nr' to 'nrow'
sam.twoclass.func: warning in matrix(nr = nrow(X), nc = B): partial
  argument match of 'nc' to 'ncol'
* checking Rd files ... NOTE
prepare_Rd: comp.fdr.Rd:52-54: Dropping empty section \details
prepare_Rd: deds.pval.Rd:65-68: Dropping empty section \examples
prepare_Rd: hist.DEDS.Rd:47-50: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [15s/17s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
deds.chooseTest 6.272  0.121   7.120
deds.stat       4.759  0.057   5.191
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/DEDS.Rcheck/00check.log'
for details.

* installing *source* package 'DEDS' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c deds.c -o deds.o
deds.c:26:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  F=(double *)malloc(sizeof(double)*(*pnrow));
                                   ˜ ^˜˜˜˜˜
deds.c:97:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  extras=(float *)malloc(nT*sizeof(float));
                         ^˜˜
deds.c:98:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(extras, ptd->extras, nT*sizeof(float));
                              ^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:98:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(extras, ptd->extras, nT*sizeof(float));
                              ^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
deds.c:99:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bL=(int *)malloc(ncol*sizeof(int));
                   ^˜˜˜˜
deds.c:100:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  L=(int *)malloc(ncol*sizeof(int));
                  ^˜˜˜˜
deds.c:101:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(L, pdata->L, ncol*sizeof(int));
                      ^˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:101:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(L, pdata->L, ncol*sizeof(int));
                      ^˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
deds.c:102:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  T=(float **)malloc(sizeof(float*)*nrow);
                                   ˜^˜˜˜
deds.c:104:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    T[i]=(float *)malloc(sizeof(float)*nT);
                                      ˜^˜
deds.c:105:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  tmpT=(float *)malloc(sizeof(float)*nrow);
                                    ˜^˜˜˜
deds.c:106:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bE=(float *)malloc(sizeof(float)*nT);
                                  ˜^˜
deds.c:107:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  E=(float *)malloc(sizeof(float)*nT);
                                 ˜^˜
deds.c:108:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  fF=(float *)malloc(sizeof(float)*nrow);
                                  ˜^˜˜˜
deds.c:109:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bD=(float *)malloc(sizeof(float)*nrow);
                                  ˜^˜˜˜
deds.c:111:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bMD=(float *)malloc(sizeof(float)*(nrow*(*B)));
                                   ˜ ˜˜˜˜^˜˜˜˜
deds.c:112:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bT=(float ***)malloc(sizeof(float **)*(*B));
                                       ˜ ^˜
deds.c:114:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    bT[i]=(float **)malloc(sizeof(float *)*nrow);
                                          ˜^˜˜˜
deds.c:116:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      bT[i][j]=(float *)malloc(sizeof(float)*nT);
                                            ˜^˜
deds.c:130:37: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      if(func_max==max_abs) tmpT[j]=fabs(tmpT[j]);
                                   ˜^˜˜˜˜˜˜˜˜˜˜˜˜
deds.c:155:38: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
          if(func_max==max_abs) bT[b][j][i]=fabs(bT[b][j][i]);
                                           ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
deds.c:230:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  extras=(float *)malloc(nT*sizeof(float));
                         ^˜˜
deds.c:231:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(extras, ptd->extras, nT*sizeof(float));
                              ^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:231:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(extras, ptd->extras, nT*sizeof(float));
                              ^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
deds.c:232:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bL=(int *)malloc(ncol*sizeof(int));
                   ^˜˜˜˜
deds.c:233:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  L=(int *)malloc(ncol*sizeof(int));
                  ^˜˜˜˜
deds.c:234:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(L, pdata->L, ncol*sizeof(int));
                      ^˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:234:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(L, pdata->L, ncol*sizeof(int));
                      ^˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
deds.c:235:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  tmpT=(float *)malloc(sizeof(float)*nrow);
                                    ˜^˜˜˜
deds.c:236:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  T=(float **)malloc(sizeof(float *)*nrow);
                                    ˜^˜˜˜
deds.c:238:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    T[i]=(float *)malloc(sizeof(float)*nT);
                                      ˜^˜
deds.c:239:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bE=(float *)malloc(sizeof(float)*nT);
                                  ˜^˜
deds.c:240:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  E=(float *)malloc(sizeof(float)*nT);
                                 ˜^˜
deds.c:241:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  D=(float *)malloc(sizeof(float)*nrow);
                                 ˜^˜˜˜
deds.c:254:37: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      if(func_max==max_abs) tmpT[j]=fabs(tmpT[j]);
                                   ˜^˜˜˜˜˜˜˜˜˜˜˜˜
deds.c:332:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  extras=(float *)malloc(nT*sizeof(float));
                         ^˜˜
deds.c:333:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(extras, ptd->extras, nT*sizeof(float));
                              ^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:333:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(extras, ptd->extras, nT*sizeof(float));
                              ^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
deds.c:334:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  L=(int *)malloc(sizeof(int)*ncol);
                             ˜^˜˜˜
deds.c:335:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(L, pdata->L, sizeof(int)*ncol);
                                 ˜^˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:335:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(L, pdata->L, sizeof(int)*ncol);
                                 ˜^˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
deds.c:336:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bL=(int *)malloc(sizeof(int)*ncol);
                              ˜^˜˜˜
deds.c:337:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  tmpT=(float *)malloc(sizeof(float)*(nrow));
                                    ˜ ^˜˜˜
deds.c:338:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bT=(float **)malloc(sizeof(float*)*nrow);
                                    ˜^˜˜˜
deds.c:340:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    bT[i]=(float *)malloc(sizeof(float)*nT);
                                       ˜^˜
deds.c:341:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  fE=(float *)malloc(sizeof(float)*nT);
                                  ˜^˜
deds.c:342:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  fF=(float *)malloc(sizeof(float)*nrow);
                                  ˜^˜˜˜
deds.c:343:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bD=(float *)malloc(sizeof(float)*nrow);
                                  ˜^˜˜˜
deds.c:344:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bMD=(float *)malloc(sizeof(float)*(nrow*(*B)));
                                   ˜ ˜˜˜˜^˜˜˜˜
deds.c:355:35: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
          if(func_max==max_abs) bT[j][i]=fabs(bT[j][i]);
                                        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
deds.c:398:47: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  td->stat_array=(FUNC_COMPUTE_STAT *)malloc((*nT)*sizeof(FUNC_COMPUTE_STAT));
                                              ^˜˜ ˜
deds.c:399:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  td->extras=(float *)malloc((*nT)*sizeof(float));
                              ^˜˜ ˜
deds.c:511:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bMD=(float **)malloc(sizeof(float *)*(*pnrow));
                                      ˜ ^˜˜˜˜˜
deds.c:513:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    bMD[i]=(float *)malloc(sizeof(float)*(*pncol));
                                        ˜ ^˜˜˜˜˜
deds.c:514:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count=(float **)malloc(sizeof(float *)*(*nsig));
                                        ˜ ^˜˜˜˜
deds.c:516:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    count[i]=(float *)malloc(sizeof(float)*(*pncol));
                                          ˜ ^˜˜˜˜˜
deds.c:517:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(count[i], 0, sizeof(float)*(*pncol));
                                     ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:517:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(count[i], 0, sizeof(float)*(*pncol));
                                     ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
deds.c:536:30: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if(!R_FINITE(D[i])) F[i]=NA_REAL;
                            ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
deds.c:578:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bMD=(float **)malloc(sizeof(float *)*(*pnrow));
                                      ˜ ^˜˜˜˜˜
deds.c:580:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    bMD[i]=(float *)malloc(sizeof(float)*(*pncol));
                                        ˜ ^˜˜˜˜˜
deds.c:581:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count=(int *)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
deds.c:582:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  total=(int *)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
deds.c:583:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  Adj_P=(float *)malloc(sizeof(float)*(*pnrow));
                                     ˜ ^˜˜˜˜˜
deds.c:584:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count, 0, sizeof(int)*(*pnrow));
                              ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:584:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count, 0, sizeof(int)*(*pnrow));
                              ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
deds.c:585:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total, 0, sizeof(int)*(*pnrow));
                              ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
deds.c:585:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total, 0, sizeof(int)*(*pnrow));
                              ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
deds.c:609:16: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      Adj_P[i]=NA_REAL;
              ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
deds.c:610:31: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else Adj_P[i]=count[i]*1.0/total[i];
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
70 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c distance.c -o distance.o
distance.c:6:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  ad=(float *)malloc(sizeof(float)*n);
                                  ˜^
distance.c:11:34: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      if (!R_FINITE(X[i])) ad[i]=NA_REAL;
                                ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
distance.c:12:19: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      else  ad[i]=fabs(X[i]-med);
                 ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
distance.c:14:13: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  res=1.4826*median(ad, n);
     ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
distance.c:26:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count=(int *)malloc(nrow*sizeof(int));
                      ^˜˜˜˜
distance.c:27:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count, 0, nrow*sizeof(int));
                   ^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
distance.c:27:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count, 0, nrow*sizeof(int));
                   ^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
distance.c:28:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  D=(float *)malloc(nrow*sizeof(float));
                    ^˜˜˜˜
distance.c:29:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(D, 0, nrow*sizeof(float));
               ^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
distance.c:29:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(D, 0, nrow*sizeof(float));
               ^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
distance.c:43:28: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if (count[i]==0) D[i]= NA_REAL;
                         ˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
distance.c:46:12: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      D[i]=sqrt(D[i]);
          ˜^˜˜˜˜˜˜˜˜˜
distance.c:48:15: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else D[i]=sqrt(D[i]);
             ˜^˜˜˜˜˜˜˜˜˜
distance.c:60:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  oV=(float *)malloc(sizeof(float)*n);
                                  ˜^
distance.c:68:11: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  qsort(R,n,sizeof(R[0]),indexCompare);
  ˜˜˜˜˜   ^
distance.c:75:11: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  qsort(V,n,sizeof(V[0]),distCompare);
  ˜˜˜˜˜   ^
16 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c input.c -o input.o
input.c:9:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  pdata->d=(float **)malloc(sizeof(float*)*nrow);
                                          ˜^˜˜˜
input.c:10:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  pdata->L=(int*)malloc(sizeof(int)*ncol);
                                   ˜^˜˜˜
input.c:13:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(pdata->L,0,sizeof(int)*ncol);
                               ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
input.c:13:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(pdata->L,0,sizeof(int)*ncol);
                               ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
input.c:18:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    pdata->d[i]=(float *) malloc(sizeof(float)*ncol);
                                              ˜^˜˜˜
input.c:56:22: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      pdata->d[i][j]=d[j*pdata->nrow+i];
                    ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
input.c:83:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  pdr->R=(int *)malloc(sizeof(int)*(*pnrow));
                                  ˜ ^˜˜˜˜˜
input.c:84:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  pdr->E=(float *)malloc(sizeof(float)*(*pnT));
                                      ˜ ^˜˜˜
input.c:85:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  pdr->D=(float *)malloc(sizeof(float)*(*pnrow));
                                      ˜ ^˜˜˜˜˜
input.c:86:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  pdr->wval=(float *)malloc(sizeof(float)*(*pnT));
                                         ˜ ^˜˜˜
input.c:87:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  pdr->FDR=(double *)malloc(sizeof(double)*(*pnrow));
                                          ˜ ^˜˜˜˜˜
input.c:88:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  pdr->T=(float **)malloc(sizeof(float *)*(*pnrow));
                                         ˜ ^˜˜˜˜˜
input.c:90:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    pdr->T[i]=(float *)malloc(sizeof(float)*(*pnT));
                                           ˜ ^˜˜˜
input.c:111:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  ptmod->mean=(float *)malloc(sizeof(float)*(*pnrow));
                                           ˜ ^˜˜˜˜˜
input.c:112:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  ptmod->sigma2=(float *)malloc(sizeof(float)*(*pnrow));
                                             ˜ ^˜˜˜˜˜
input.c:113:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  ptmod->df_resid=(int *)malloc(sizeof(int)*(*pnrow));
                                           ˜ ^˜˜˜˜˜
input.c:114:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  ptmod->stdev_unscale=(float *)malloc(sizeof(float)*(*pnrow));
                                                    ˜ ^˜˜˜˜˜
input.c:138:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  old_d=(float**)malloc(sizeof(float*)*nrow);
                                      ˜^˜˜˜
input.c:162:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  old_V=(float*)malloc(sizeof(float)*n);
                                    ˜^
19 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c manip.c -o manip.o
manip.c:11:11: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  qsort(R,n,sizeof(R[0]),func_cmp);
  ˜˜˜˜˜   ^
manip.c:32:12: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  float f1=fabs(*(gp_arr+*(int *)v1));
        ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
manip.c:33:12: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  float f2=fabs(*(gp_arr+*(int *)v2));
        ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
manip.c:86:24: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if (count==0) return(NA_REAL);
                ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
manip.c:87:15: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  else return(tmp);
       ˜˜˜˜˜˜ ^˜˜
manip.c:104:24: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if (count==0) return(NA_REAL);
                ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
manip.c:105:15: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  else return(tmp);
       ˜˜˜˜˜˜ ^˜˜
manip.c:119:11: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      tmp=fabs(X[i]);
         ˜^˜˜˜˜˜˜˜˜˜
manip.c:122:24: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if (count==0) return(NA_REAL);
                ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
manip.c:143:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  dX=(int *)malloc(n*sizeof(int));
                   ^˜
manip.c:147:17: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
      dX[total]=i;
               ˜^
manip.c:169:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   dX=(int *)malloc(nX*sizeof(int));
                    ^˜˜
manip.c:170:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   index=(double *)malloc(nq*sizeof(double));
                          ^˜˜
manip.c:171:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   lo=(double *)malloc(nq*sizeof(double));
                       ^˜˜
manip.c:172:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   hi=(double *)malloc(nq*sizeof(double));
                       ^˜˜
manip.c:173:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   qX=(float *)malloc(nq*sizeof(float));
                      ^˜˜
manip.c:195:23: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
     else ret[i]=qX[i]+(sX[(int)hi[i]]-sX[(int)lo[i]])*(index[i]-lo[i]);
                ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
manip.c:178:17: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
      dX[total]=i;
               ˜^
manip.c:217:15: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
  x=median(X, *n);
    ˜˜˜˜˜˜    ^˜
19 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c random.c -o random.o
random.c:22:20: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      f=unif_rand()*(n-i);
       ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
random.c:23:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
      j=i+floor(f);
       ˜˜^˜˜˜˜˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c sampling.c -o sampling.o
sampling.c:23:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  l_L=(int *)malloc(n*sizeof(int));
                    ^˜
sampling.c:24:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_L, L, sizeof(int)*n);
                            ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
sampling.c:24:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_L, L, sizeof(int)*n);
                            ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
sampling.c:36:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  l_nk=(int *)malloc(k*sizeof(int));
                     ^˜
sampling.c:37:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(l_nk, 0, sizeof(int)*k);
                             ˜^
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
sampling.c:37:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(l_nk, 0, sizeof(int)*k);
                             ˜^
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
sampling.c:66:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  l_permun=(int *)malloc(n*sizeof(int));
                         ^˜
sampling.c:67:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  l_ordern=(int *)malloc(n*sizeof(int));
                         ^˜
sampling.c:90:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_permun, l_ordern, sizeof(int)*n);
                                        ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
sampling.c:90:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_permun, l_ordern, sizeof(int)*n);
                                        ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
sampling.c:103:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_permun, l_ordern, sizeof(int)*n);
                                        ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
sampling.c:103:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_permun, l_ordern, sizeof(int)*n);
                                        ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
12 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c stat_fun.c -o stat_fun.o
stat_fun.c:29:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  TB=(float *)malloc(sizeof(float)*(*pnrow));
                                  ˜ ^˜˜˜˜˜
stat_fun.c:30:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bL=(int *)malloc(sizeof(int)*(*pncol));
                              ˜ ^˜˜˜˜˜
stat_fun.c:31:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count=(int *)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
stat_fun.c:32:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count, 0, sizeof(int)*(*pnrow));
                              ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:32:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count, 0, sizeof(int)*(*pnrow));
                              ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:33:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  total=(int *)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
stat_fun.c:34:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total, 0, sizeof(int)*(*pnrow));
                              ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:34:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total, 0, sizeof(int)*(*pnrow));
                              ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:69:26: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if(total[i]==0) P[i]=NA_REAL;
                        ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:70:37: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else P[i]=(double)(count[i]*1.0)/(total[i]*1.0);
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:116:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  BT=(float *)malloc(sizeof(float)*(*pnrow));
                                  ˜ ^˜˜˜˜˜
stat_fun.c:117:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bL=(int *)malloc(sizeof(int)*(*pncol));
                              ˜ ^˜˜˜˜˜
stat_fun.c:118:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count1=(float*)malloc(sizeof(float)*(*pnrow));
                                     ˜ ^˜˜˜˜˜
stat_fun.c:119:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count1,0,sizeof(float)*(*pnrow)); 
                               ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:119:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count1,0,sizeof(float)*(*pnrow)); 
                               ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:120:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  total1=(int*)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
stat_fun.c:121:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total1,0,sizeof(int)*(*pnrow));
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:121:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total1,0,sizeof(int)*(*pnrow));
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:122:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count2=(float*)malloc(sizeof(float)*(*pnrow));
                                     ˜ ^˜˜˜˜˜
stat_fun.c:123:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count2,0,sizeof(float)*(*pnrow)); 
                               ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:123:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count2,0,sizeof(float)*(*pnrow)); 
                               ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:124:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  total2=(int*)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
stat_fun.c:125:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total2,0,sizeof(int)*(*pnrow));
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:125:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total2,0,sizeof(int)*(*pnrow));
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:180:7: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
          QT=fabs(BT[i]);
            ˜^˜˜˜˜˜˜˜˜˜˜
stat_fun.c:182:7: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
          QT=fabs(BT[i]);
            ˜^˜˜˜˜˜˜˜˜˜˜
stat_fun.c:197:28: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else P[i]=count2[i]*1.0/total2[i];
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
stat_fun.c:203:32: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else Adj_P[i]=count1[i]*1.0/total1[i];
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
stat_fun.c:233:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  BT=(float **)malloc(sizeof(float *)*(*B));
                                     ˜ ^˜
stat_fun.c:235:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    BT[i]=(float *)malloc(sizeof(float)*(*pnrow));
                                       ˜ ^˜˜˜˜˜
stat_fun.c:237:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bL=(int *)malloc(sizeof(int)*(*pncol));
                              ˜ ^˜˜˜˜˜
stat_fun.c:238:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count1=(int*)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
stat_fun.c:239:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count1,0,sizeof(int)*(*pnrow)); 
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:239:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count1,0,sizeof(int)*(*pnrow)); 
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:240:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  total2=(int*)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
stat_fun.c:241:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total2,0,sizeof(int)*(*pnrow));
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:241:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total2,0,sizeof(int)*(*pnrow));
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:242:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count2=(int*)malloc(sizeof(int)*(*pnrow));
                                 ˜ ^˜˜˜˜˜
stat_fun.c:243:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count2,0,sizeof(int)*(*pnrow)); 
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:243:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count2,0,sizeof(int)*(*pnrow)); 
                             ˜ ^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:284:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  junk=(float*)malloc(sizeof(float)*total);
                                   ˜^˜˜˜˜
stat_fun.c:285:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  R1=(int*)malloc(sizeof(int)*total);
                             ˜^˜˜˜˜
stat_fun.c:327:22: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  pi0=total1*1.0/(*B)/(0.5*(*pnrow));
     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:336:28: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else P[i]=count2[i]*1.0/total2[i];
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
stat_fun.c:339:36: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    FDR[i]=pi0*(count1[i]*1.0)/(*B)/(i+1);
          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
stat_fun.c:395:39: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if(ss_na[0] + ss_na[1] == 0) return NA_REAL;
                               ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:399:11: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  denum = sqrt(ss_na[0]/c0 + ss_na[1]/c1);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:438:9: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  ss_na=sqrt(ss_na/(float)count);
       ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:440:24: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if (ss_na==0) return NA_REAL;
                ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:470:46: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if ((count[0]==0) || (count[1]==0)) return(NA_REAL);
                                      ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:504:24: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if (count==0) return(NA_REAL); 
                ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:522:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  mean_na=(float *)malloc(nL*sizeof(float));
                          ^˜˜
stat_fun.c:523:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(mean_na, 0, nL*sizeof(float));
                     ^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:523:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(mean_na, 0, nL*sizeof(float));
                     ^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:524:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  count=(int *)malloc(nL*sizeof(int));
                      ^˜˜
stat_fun.c:525:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count, 0, nL*sizeof(int));
                   ^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:525:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count, 0, nL*sizeof(int));
                   ^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:537:29: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if (count[i]==0) return(NA_REAL);
                     ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:558:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  num=(float *)malloc(sizeof(float)*nrow);
                                   ˜^˜˜˜
stat_fun.c:559:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  denum=(float *)malloc(sizeof(float)*nrow);
                                     ˜^˜˜˜
stat_fun.c:582:47: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if((ss_na[0]==0)||(ss_na[1]==0)) denum[i]=NA_REAL;
                                             ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:584:26: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      c0=1/(1.0*count[0])+1/(1.0*count[1]);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:587:16: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      denum[i]=sqrt((ss_na[0] + ss_na[1])*c0/c1);
              ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:594:30: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if (ISNA(denum[i])) T[i]=NA_REAL;
                            ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:611:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  num=(float *)malloc(sizeof(float)*nrow);
                                   ˜^˜˜˜
stat_fun.c:612:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  denum=(float *)malloc(sizeof(float)*nrow);
                                     ˜^˜˜˜
stat_fun.c:640:27: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if(count==0) denum[i]=NA_REAL;
                         ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:643:16: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      denum[i]=sqrt(ss_na/(count*(count-1)*1.0));
              ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:649:30: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if (ISNA(denum[i])) T[i]=NA_REAL;
                            ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:666:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  num=(float *)malloc(sizeof(float)*nrow);
                                   ˜^˜˜˜
stat_fun.c:667:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  denum=(float *)malloc(sizeof(float)*nrow);
                                     ˜^˜˜˜
stat_fun.c:674:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(meani, 0, sizeof(float)*nL);
                                  ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:674:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(meani, 0, sizeof(float)*nL);
                                  ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:675:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(ssi, 0, sizeof(float)*nL);
                                ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:675:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(ssi, 0, sizeof(float)*nL);
                                ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:676:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(counti, 0, sizeof(int)*nL);
                                 ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:676:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(counti, 0, sizeof(int)*nL);
                                 ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:706:22: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    num[i]=(N/N1)*bss/(nL-1.0);
          ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
stat_fun.c:707:20: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    denum[i]=N2*wss/(N-nL-0.0);
            ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
stat_fun.c:734:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(meani, 0, sizeof(float)*nL);
                                ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:734:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(meani, 0, sizeof(float)*nL);
                                ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:735:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(ssi, 0, sizeof(float)*nL);
                              ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:735:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(ssi, 0, sizeof(float)*nL);
                              ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:736:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(counti, 0, sizeof(int)*nL);
                               ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:736:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(counti, 0, sizeof(int)*nL);
                               ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:777:23: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if(valid==0) return NA_REAL;
               ˜˜˜˜˜˜ ^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:779:12: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    num=bss/(nL-1.0);
       ˜˜˜˜^˜˜˜˜˜˜˜˜
stat_fun.c:780:14: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    denum=wss/(N-nL-0.0);
         ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
stat_fun.c:828:29: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    ptmod->stdev_unscale[i]=sqrt(1.0/count[0]+1.0/count[1]);
                           ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:871:29: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    ptmod->stdev_unscale[i]=sqrt(1.0/count);
                           ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:885:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  s2_post=(float *)malloc(sizeof(float)*nrow);
                                       ˜^˜˜˜
stat_fun.c:897:47: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if(!R_FINITE(tmod.stdev_unscale[i])) T[i]=NA_REAL;
                                             ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:898:27: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else T[i]=tmod.mean[i]/(tmod.stdev_unscale[i]*sqrt(s2_post[i]));
             ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:936:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  sigma2=(float *)malloc(sizeof(float)*nrow);
                                      ˜^˜˜˜
stat_fun.c:937:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  df_resid=(int *)malloc(sizeof(int)*nrow);
                                    ˜^˜˜˜
stat_fun.c:938:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  s2_post=(float *)malloc(sizeof(float)*nrow);
                                       ˜^˜˜˜
stat_fun.c:939:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  bss=(float *)malloc(sizeof(float)*nrow);
                                   ˜^˜˜˜
stat_fun.c:940:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(bss, 0, sizeof(float)*nrow);
                              ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:940:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(bss, 0, sizeof(float)*nrow);
                              ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:941:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  wss=(float *)malloc(sizeof(float)*nrow);
                                   ˜^˜˜˜
stat_fun.c:942:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(wss, 0, sizeof(float)*nrow);
                              ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:942:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(wss, 0, sizeof(float)*nrow);
                              ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:948:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(mean, 0, sizeof(float)*nL);
                                 ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:948:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(mean, 0, sizeof(float)*nL);
                                 ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:949:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(ss, 0, sizeof(float)*nL);
                               ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:949:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(ss, 0, sizeof(float)*nL);
                               ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:950:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(count, 0, sizeof(int)*nL);
                                ˜^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:950:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memset(count, 0, sizeof(int)*nL);
                                ˜^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:989:36: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if(!R_FINITE(s2_post[i])) T[i]=NA_REAL;
                                  ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:990:30: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else T[i]=bss[i]/(nL-1.0)/s2_post[i];
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
stat_fun.c:1006:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  z=(float *)malloc(sizeof(float)*n);
                                 ˜^
stat_fun.c:1007:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  e=(float *)malloc(sizeof(float)*n);
                                 ˜^
stat_fun.c:1011:13: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
       z[i]=log(sigma2[i]);
           ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:1012:39: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
       e[i]=z[i]-digamma(df1[i]*1.0/2)+log(df1[i]*1.0/2);
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:1027:12: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    *scale=exp(emean+digamma(*df2/2)-log(*df2/2));
          ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:1031:12: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    *scale=exp(emean);
          ˜^˜˜˜˜˜˜˜˜˜
stat_fun.c:1040:17: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if(x>1e+7) y=1/sqrt(x);
              ˜˜^˜˜˜˜˜˜˜
stat_fun.c:1043:10: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    y=0.5+1/x;
     ˜˜˜˜^˜˜˜
stat_fun.c:1045:11: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      tri=trigamma(y);
         ˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rmath.h:337:18: note: expanded from macro 'trigamma'
#define trigamma        Rf_trigamma
                        ^
stat_fun.c:1046:28: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      dif=tri*(1 - tri/(x))/tetragamma(y);
         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:1065:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  dt=(int *)malloc(sizeof(int)*n);
                              ˜^
stat_fun.c:1074:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  n_t=(float *)malloc(total*sizeof(float));
                      ^˜˜˜˜˜
stat_fun.c:1075:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  n_std=(float *)malloc(total*sizeof(float));
                        ^˜˜˜˜˜
stat_fun.c:1076:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  n_df=(float *)malloc(total*sizeof(float));
                       ^˜˜˜˜˜
stat_fun.c:1085:22: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
   if(ntarget<1) res=NA_REAL;
                    ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:1091:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     index=(int *)malloc(sizeof(int)*total);
                                    ˜^˜˜˜˜
stat_fun.c:1092:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     ttop=(float *)malloc(sizeof(float)*ntarget);
                                       ˜^˜˜˜˜˜˜
stat_fun.c:1093:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     c1=(float *)malloc(sizeof(float)*ntarget);
                                     ˜^˜˜˜˜˜˜
stat_fun.c:1094:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     df1=(float *)malloc(sizeof(float)*ntarget);
                                      ˜^˜˜˜˜˜˜
stat_fun.c:1095:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     p0=(double *)malloc(sizeof(double)*ntarget);
                                       ˜^˜˜˜˜˜˜
stat_fun.c:1096:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     ptarget=(double *)malloc(sizeof(double)*ntarget);
                                            ˜^˜˜˜˜˜˜
stat_fun.c:1097:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     c0=(float *)malloc(sizeof(float)*ntarget);
                                     ˜^˜˜˜˜˜˜
stat_fun.c:1098:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(c0, 0, sizeof(float)*ntarget);
                                ˜^˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
stat_fun.c:1098:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     memset(c0, 0, sizeof(float)*ntarget);
                                ˜^˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
stat_fun.c:1101:15: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
       n_t[i]=fabs(n_t[i]);
             ˜^˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:1106:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     qsort(n_t, total, sizeof(n_t[0]), distCompare);
     ˜˜˜˜˜      ^˜˜˜˜
stat_fun.c:1174:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  df_total=(float *)malloc(sizeof(int)*nrow);
                                      ˜^˜˜˜
stat_fun.c:1175:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  s2_post=(float *)malloc(sizeof(float)*nrow);
                                       ˜^˜˜˜
stat_fun.c:1176:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  r=(float *)malloc(sizeof(float)*nrow);
                                 ˜^˜˜˜
stat_fun.c:1177:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  kernel=(float *)malloc(sizeof(float)*nrow);
                                      ˜^˜˜˜
stat_fun.c:1178:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  T=(float *)malloc(sizeof(float)*nrow);
                                 ˜^˜˜˜
stat_fun.c:1189:22: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else df_total[i]=NA_REAL;
                    ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:1194:47: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    if(!R_FINITE(tmod.stdev_unscale[i])) T[i]=NA_REAL;
                                             ˜^˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/Arith.h:54:18: note: expanded from macro 'NA_REAL'
#define NA_REAL         R_NaReal
                        ^˜˜˜˜˜˜˜
stat_fun.c:1195:27: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else T[i]=tmod.mean[i]/(tmod.stdev_unscale[i]*sqrt(s2_post[i]));
             ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:1201:41: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  if(varprior<0.1/s2_prior) varprior=0.1/s2_prior;
                                    ˜˜˜˜^˜˜˜˜˜˜˜˜
stat_fun.c:1206:38: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    else  kernel[i]=(1+df_total[i])/2*log((T[i]*T[i]+df_total[i])/(T[i]*T[i]/r[i]+df_total[i]));
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
stat_fun.c:1207:52: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
    B[i]=log(proportion/(1-proportion))-log(r[i])/2+kernel[i];
        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
147 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o DEDS.so deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/DEDS.Rcheck/DEDS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DEDS)

name	user	system	elapsed
aggregateFun	0.026	0.002	0.029
comp.B	0.021	0.004	0.025
comp.F	0.354	0.008	0.397
comp.FC	0.017	0.003	0.028
comp.SAM	1.453	0.025	1.609
comp.adjp	0.028	0.003	0.033
comp.ebayes	0.020	0.002	0.024
comp.fdr	0.043	0.004	0.047
comp.modF	0.058	0.003	0.064
comp.modt	0.017	0.002	0.026
comp.stat	0.031	0.004	0.037
comp.t	0.032	0.002	0.035
comp.unadjp	0.029	0.003	0.033
deds.chooseTest	6.272	0.121	7.120
deds.genExtra	0.004	0.001	0.005
deds.stat	4.759	0.057	5.191
deds.stat.linkC	0.074	0.002	0.079
pairs.DEDS	0.211	0.007	0.453
qqnorm.DEDS	0.114	0.005	0.283
topgenes	0.132	0.003	0.197