Repitools 1.6.0
Mark Robinson
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/Repitools | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Repitools.buildbin-libdir Repitools_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'Repitools' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c const.c -o const.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c hyp2f1.c -o hyp2f1.o
hyp2f1.c:242:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
aid = 2 - id;
˜ ˜˜^˜˜˜
hyp2f1.c:352:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
aid = id;
˜ ^˜
hyp2f1.c:359:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
aid = -id;
˜ ^˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -D R_NO_REMAP -I. -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mtherr.c -o mtherr.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o Repitools.so const.o hyp2f1.o mtherr.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/Repitools.buildbin-libdir/Repitools/libs
** R
** data
** inst
** preparing package for lazy loading
in method for '.featureScores' with signature '"AffymetrixCelSet","GRanges"': no definition for class "AffymetrixCelSet"
in method for 'regionStats' with signature '"AffymetrixCelSet"': no definition for class "AffymetrixCelSet"
in method for 'writeWig' with signature '"AffymetrixCelSet"': no definition for class "AffymetrixCelSet"
in method for 'cpgBoxplots' with signature '"AffymetrixCelSet"': no definition for class "AffymetrixCelSet"
in method for '.blocksStats' with signature '"AffymetrixCelSet","GRanges"': no definition for class "AffymetrixCelSet"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Repitools)
>>>>>>>
>>>>>>> FIXING LINKS FOR Repitools.buildbin-libdir/Repitools/libs//Repitools.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "Repitools.buildbin-libdir/Repitools/libs//Repitools.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "Repitools.buildbin-libdir/Repitools/libs//Repitools.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "Repitools.buildbin-libdir/Repitools/libs//Repitools.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "Repitools.buildbin-libdir/Repitools/libs//Repitools.so"