BioC 2.12: CHECK report for stepwiseCM on moscato2

Package: stepwiseCM

Version: 1.6.0

Command: rm -rf stepwiseCM.buildbin-libdir && mkdir stepwiseCM.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=stepwiseCM.buildbin-libdir stepwiseCM_1.6.0.tar.gz >stepwiseCM-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=stepwiseCM.buildbin-libdir --install="check:stepwiseCM-install.out" --force-multiarch --no-vignettes --timings stepwiseCM_1.6.0.tar.gz && mv stepwiseCM.buildbin-libdir/* stepwiseCM.Rcheck/ && rmdir stepwiseCM.buildbin-libdir

StartedAt: 2013-10-09 04:23:43 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 04:31:39 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 476.1 seconds

RetCode: 0

Status:  OK

CheckDir: stepwiseCM.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/stepwiseCM.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'stepwiseCM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'stepwiseCM' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'stepwiseCM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  GPL (http://www.gnu.org/copyleft/gpl.html)
Standardizable: TRUE
Standardized license specification:
  GPL
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Classifier.par: no visible binding for global variable 'stepwiseCM'
Proximity: no visible binding for global variable 'Stepwise'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [179s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
stepwiseCM-package 36.30   0.25   36.55
Curve.generator    35.18   0.43   35.62
Step.pred          35.21   0.04   35.25
RS.generator       30.93   0.08   31.03
Proximity          21.85   0.02   21.87
Classifier         14.22   0.09   14.31
** running examples for arch 'x64' ... [198s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
Curve.generator    38.94   0.57   39.52
RS.generator       36.19   0.02   36.21
Step.pred          35.60   0.05   35.64
stepwiseCM-package 32.87   0.28   33.17
Classifier         25.39   0.11   25.52
Proximity          22.51   0.03   22.54
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.12-bioc/meat/stepwiseCM.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'stepwiseCM' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'stepwiseCM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'stepwiseCM' as stepwiseCM_1.6.0.zip
* DONE (stepwiseCM)