twilight 1.36.0
Stefanie Scheid
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/twilight | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=twilight.buildbin-libdir twilight_1.36.0.tar.gz'
>>>>>>>
* installing *source* package 'twilight' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c confidence.line.c -o confidence.line.o
confidence.line.c:86:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare1);
˜˜˜˜˜ ^˜˜˜˜˜
confidence.line.c:87:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)sobs,*ngene,sizeof(double),compare1);
˜˜˜˜˜ ^˜˜˜˜˜
confidence.line.c:94:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare1);
˜˜˜˜˜ ^˜˜˜˜˜
confidence.line.c:207:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare1);
˜˜˜˜˜ ^˜˜˜˜˜
confidence.line.c:208:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)sobs,*ngene,sizeof(double),compare1);
˜˜˜˜˜ ^˜˜˜˜˜
confidence.line.c:215:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare1);
˜˜˜˜˜ ^˜˜˜˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c correlation.c -o correlation.o
correlation.c:102:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare7);
˜˜˜˜˜ ^˜˜˜˜˜
correlation.c:183:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare7);
˜˜˜˜˜ ^˜˜˜˜˜
correlation.c:184:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)sobs,*ngene,sizeof(double),compare7);
˜˜˜˜˜ ^˜˜˜˜˜
correlation.c:191:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare7);
˜˜˜˜˜ ^˜˜˜˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c kstest.c -o kstest.o
kstest.c:72:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)asort,nrowa,sizeof(double),compare11);
˜˜˜˜˜ ^˜˜˜˜
kstest.c:182:21: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)ssort,*ngene,sizeof(double),compare11);
˜˜˜˜˜ ^˜˜˜˜˜
kstest.c:296:21: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)ssort,*ngene,sizeof(double),compare11);
˜˜˜˜˜ ^˜˜˜˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c sep.c -o sep.o
sep.c:70:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
ix[randnum]=fabs(1-ix[randnum]);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
sep.c:97:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
ix[randnum]=fabs(1-ix[randnum]);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
sep.c:116:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
ix[randnum]=fabs(1-ix[randnum]);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
sep.c:143:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
ix[randnum]=fabs(1-ix[randnum]);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c twosample.perm.c -o twosample.perm.o
twosample.perm.c:100:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare2);
˜˜˜˜˜ ^˜˜˜˜˜
twosample.perm.c:214:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)stat,*ngene,sizeof(double),compare2);
˜˜˜˜˜ ^˜˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c twosample.single.c -o twosample.single.o
twosample.single.c:75:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)ssort,*ngene,sizeof(double),compare3);
˜˜˜˜˜ ^˜˜˜˜˜
twosample.single.c:152:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort((void*)ssort,*ngene,sizeof(double),compare3);
˜˜˜˜˜ ^˜˜˜˜˜
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o twilight.so confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/twilight.buildbin-libdir/twilight/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'twilight'
* DONE (twilight)
>>>>>>>
>>>>>>> FIXING LINKS FOR twilight.buildbin-libdir/twilight/libs//twilight.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so"