vsn 3.28.0
Wolfgang Huber
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/vsn | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=vsn.buildbin-libdir vsn_3.28.0.tar.gz'
>>>>>>>
* installing *source* package 'vsn' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c vsn.c -o vsn.o
vsn.c:243:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x.ly = (double *) R_alloc(nr*nc, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
vsn.c:261:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x.asly = (double *) R_alloc(nr*nc, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
vsn.c:262:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x.rcasly = (double *) R_alloc(nr*nc, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
vsn.c:263:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x.dh = (double *) R_alloc(nr*nc, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
vsn.c:264:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x.lastpar = (double *) R_alloc(x.npar, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
vsn.c:289:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
cpar = (double *) R_alloc(x.npar, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
vsn.c:301:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
lower = (double *) R_alloc(x.npar, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
vsn.c:302:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
upper = (double *) R_alloc(x.npar, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
vsn.c:303:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
scale = (double *) R_alloc(x.npar, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
vsn.c:304:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
nbd = (int *) R_alloc(x.npar, sizeof(int));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
10 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c vsn2.c -o vsn2.o
vsn2.c:357:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
px->mu = (double *) R_alloc(nr, sizeof(double));
˜˜˜˜˜˜˜ ^˜
vsn2.c:366:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
px->ly = (double *) R_alloc(nr*nc, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
vsn2.c:367:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
px->asly = (double *) R_alloc(nr*nc, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
vsn2.c:368:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
px->resid = (double *) R_alloc(nr*nc, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
vsn2.c:369:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
px->ma = (double *) R_alloc(nr*nc, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
vsn2.c:370:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
px->lastpar = (double *) R_alloc(np, sizeof(double));
˜˜˜˜˜˜˜ ^˜
vsn2.c:373:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
cpar = (double *) R_alloc(np, sizeof(double));
˜˜˜˜˜˜˜ ^˜
vsn2.c:434:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
lower = (double *) R_alloc(x.npar, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
vsn2.c:435:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
upper = (double *) R_alloc(x.npar, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
vsn2.c:436:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
scale = (double *) R_alloc(x.npar, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
vsn2.c:437:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
nbd = (int *) R_alloc(x.npar, sizeof(int));
˜˜˜˜˜˜˜ ˜˜^˜˜˜
11 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o vsn.so init.o vsn.o vsn2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/vsn.buildbin-libdir/vsn/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'logLik' from package 'stats' in package 'vsn'
Creating a generic function for 'coef' from package 'stats' in package 'vsn'
Creating a generic function for 'coefficients' from package 'stats' in package 'vsn'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (vsn)
>>>>>>>
>>>>>>> FIXING LINKS FOR vsn.buildbin-libdir/vsn/libs//vsn.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "vsn.buildbin-libdir/vsn/libs//vsn.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "vsn.buildbin-libdir/vsn/libs//vsn.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "vsn.buildbin-libdir/vsn/libs//vsn.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "vsn.buildbin-libdir/vsn/libs//vsn.so"