Package: CoCiteStats

Version: 1.32.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch CoCiteStats_1.32.0.tar.gz

StartedAt: 2013-05-01 04:06:17 -0700 (Wed, 01 May 2013)

EndedAt: 2013-05-01 04:12:56 -0700 (Wed, 01 May 2013)

EllapsedTime: 399.3 seconds

RetCode: 0

Status:  OK

CheckDir: CoCiteStats.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/CoCiteStats.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'CoCiteStats/DESCRIPTION' ... OK
* this is package 'CoCiteStats' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'CoCiteStats' can be installed ... [12s/12s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [274s/280s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
actorAdjTable            56.314  1.280  59.169
gene.geneslist.sig       47.258  2.037  50.120
gene.geneslist.statistic 33.661  0.752  35.170
twowayTable              32.676  0.664  33.788
gene.gene.statistic      32.322  0.667  33.840
twTStats                 30.428  0.680  31.396
paperLen                 28.583  0.695  29.760
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/CoCiteStats.Rcheck/00check.log'
for details.

* installing *source* package 'CoCiteStats' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (CoCiteStats)

name	user	system	elapsed
actorAdjTable	56.314	1.280	59.169
gene.gene.statistic	32.322	0.667	33.840
gene.geneslist.sig	47.258	2.037	50.120
gene.geneslist.statistic	33.661	0.752	35.170
paperLen	28.583	0.695	29.760
twTStats	30.428	0.680	31.396
twowayTable	32.676	0.664	33.788