Mulcom 1.10.0
Claudio Isella
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/Mulcom | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Mulcom.buildbin-libdir Mulcom_1.10.0.tar.gz'
>>>>>>>
* installing *source* package 'Mulcom' ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mulLibs.cc -o mulLibs.o
mulLibs.cc:39:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
sum = sum + array [i];
˜˜˜˜˜ ^
mulLibs.cc:49:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
sum = sum + ( 1 / array [i] ) ;
˜˜˜˜˜ ^
mulLibs.cc:62:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
sum = sum + array [i];
˜˜˜˜˜ ^
mulLibs.cc:63:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
STD_DEV = STD_DEV + pow( array [i], 2 );
˜˜˜˜˜ ^
mulLibs.cc:79:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
sum = sum + array [i];
˜˜˜˜˜ ^
mulLibs.cc:80:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
STD_DEV = STD_DEV + pow( array [i], 2 );
˜˜˜˜˜ ^
mulLibs.cc:97:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
sum = sum + array [i];
˜˜˜˜˜ ^
mulLibs.cc:98:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
sum_squares = sum_squares + pow( array [i], 2 );
˜˜˜˜˜ ^
mulLibs.cc:153:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
current_cluster = clusters[j] ;
˜˜˜˜˜˜˜˜ ^
mulLibs.cc:245:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
current_cluster = clusters[j] ;
˜˜˜˜˜˜˜˜ ^
mulLibs.cc:331:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
current_cluster = clusters[j] ;
˜˜˜˜˜˜˜˜ ^
mulLibs.cc:467:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
current_cluster = clusters[j] ;
˜˜˜˜˜˜˜˜ ^
mulLibs.cc:538:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( buffer[i] > local_m ) { b.push_back( 1 ) ; }
˜˜˜˜˜˜ ^
mulLibs.cc:551:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ( b[ i + jump * j ] > 0 ) { v[i] += 1 ; }
˜ ˜˜^˜˜˜˜˜˜˜˜˜
mulLibs.cc:601:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
current_cluster = clusters[j] ;
˜˜˜˜˜˜˜˜ ^
mulLibs.cc:717:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
current_cluster = clusters[j] ;
˜˜˜˜˜˜˜˜ ^
mulLibs.cc:708:17: warning: expression result unused [-Wunused-value]
current_cluster ;
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
mulLibs.cc:851:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
current_cluster = clusters[j] ;
˜˜˜˜˜˜˜˜ ^
mulLibs.cc:962:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
current_cluster = clusters[j] ;
˜˜˜˜˜˜˜˜ ^
mulLibs.cc:1015:47: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
sum += ss[ j + jump * i ] ;
˜˜ ˜˜^˜˜˜˜˜˜˜˜˜
mulLibs.cc:1025:88: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mse[mse_local_index + ( ( (*N) * (*ngroups - 1) ) * simulation )] = sqrt ( ( sss2[i] * 2 / df ) / harmonic_means[j] );
˜˜˜˜ ^
mulLibs.cc:1025:119: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mse[mse_local_index + ( ( (*N) * (*ngroups - 1) ) * simulation )] = sqrt ( ( sss2[i] * 2 / df ) / harmonic_means[j] );
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
22 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/Mulcom.buildbin-libdir/Mulcom/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'Mulcom'
* DONE (Mulcom)
>>>>>>>
>>>>>>> FIXING LINKS FOR Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"