SAGx 1.34.0
Per Broberg,
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/SAGx | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SAGx.buildbin-libdir SAGx_1.34.0.tar.gz'
>>>>>>>
* installing *source* package 'SAGx' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c minigsea.c -o minigsea.o
minigsea.c:9:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int *result = (int *)malloc(*NC * sizeof(int));
^˜˜ ˜
minigsea.c:10:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *data1= (double *)malloc(*NR *(*N1) * sizeof(double));
˜˜˜˜^˜˜˜˜˜ ˜
minigsea.c:11:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *data2= (double *)malloc(*NR *(*N2) * sizeof(double));
˜˜˜˜^˜˜˜˜˜ ˜
minigsea.c:12:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *m1= (double *)malloc(*NR * sizeof(double));
^˜˜ ˜
minigsea.c:13:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *m2= (double *)malloc(*NR * sizeof(double)); /*Vector of rowmeans of data1 and data2 resp.*/
^˜˜ ˜
minigsea.c:14:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *var1= (double *)malloc(*NR * sizeof(double));
^˜˜ ˜
minigsea.c:15:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *var2= (double *)malloc(*NR * sizeof(double));
^˜˜ ˜
minigsea.c:16:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *SE= (double *)malloc(*NR * sizeof(double));
^˜˜ ˜
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c newboot.c -o newboot.o
newboot.c:12:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int *result = (int *)malloc(*NCP * sizeof(int));
^˜˜˜ ˜
newboot.c:13:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *P = (double *)malloc(*NRP*(*NCP) * sizeof(double));
˜˜˜˜^˜˜˜˜˜˜ ˜
newboot.c:14:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *beta = (double *)malloc(*NRP*(*NR) * sizeof(double));
˜˜˜˜^˜˜˜˜˜ ˜
newboot.c:15:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *yhat = (double *)malloc(*NR*(*NC) * sizeof(double));
˜˜˜^˜˜˜˜˜ ˜
newboot.c:16:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *resid = (double *)malloc(*NR*(*NC) * sizeof(double));
˜˜˜^˜˜˜˜˜ ˜
newboot.c:17:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *var = (double *)malloc(*NR * sizeof(double));
^˜˜ ˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c samrocNboot.c -o samrocNboot.o
samrocNboot.c:11:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int *result = (int *)malloc(*NCP * sizeof(int));
^˜˜˜ ˜
samrocNboot.c:12:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *P = (double *)malloc(*NRP*(*NCP) * sizeof(double));
˜˜˜˜^˜˜˜˜˜˜ ˜
samrocNboot.c:13:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *beta = (double *)malloc(*NRP*(*NR) * sizeof(double));
˜˜˜˜^˜˜˜˜˜ ˜
samrocNboot.c:14:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *yhat = (double *)malloc(*NR*(*NC) * sizeof(double));
˜˜˜^˜˜˜˜˜ ˜
samrocNboot.c:15:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *resid = (double *)malloc(*NR*(*NC) * sizeof(double));
˜˜˜^˜˜˜˜˜ ˜
samrocNboot.c:16:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *var = (double *)malloc(*NR * sizeof(double));
^˜˜ ˜
6 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o SAGx.so minigsea.o newboot.o samrocNboot.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/SAGx.buildbin-libdir/SAGx/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SAGx)
>>>>>>>
>>>>>>> FIXING LINKS FOR SAGx.buildbin-libdir/SAGx/libs//SAGx.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so"