maanova 1.30.0
Keith Sheppard
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/maanova | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=maanova.buildbin-libdir maanova_1.30.0.tar.gz'
>>>>>>>
* installing *source* package 'maanova' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c makeratio.c -o makeratio.o
makeratio.c:31:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp = (double *)R_alloc((*nrow)*(*ncol), sizeof(double));
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1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c masvd.c -o masvd.o
masvd.c:37:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
xvals = (double *) R_alloc(n * p, sizeof(double));
˜˜˜˜˜˜˜ ˜˜^˜˜
masvd.c:53:28: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
work = (double *) R_alloc(lwork, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜
masvd.c:64:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *iwork= (int *) R_alloc(8*(n<p ? n : p), sizeof(int));
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masvd.c:76:28: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
work = (double *) R_alloc(lwork, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜
masvd.c:114:2: warning: '/*' within block comment [-Wcomment]
/* work on a copy of x */
^
masvd.c:154:1: warning: '/*' within block comment [-Wcomment]
/*#ifndef IEEE_754
^
masvd.c:161:5: warning: '/*' within block comment [-Wcomment]
/* work on a copy of x */
^
masvd.c:165:2: warning: '/*' within block comment [-Wcomment]
/* ask for optimal size of work array */
^
masvd.c:189:2: warning: '/*' within block comment [-Wcomment]
/* ask for optimal size of work array */
^
9 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c shift.c -o shift.o
shift.c:31:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
x = (double *)R_alloc(3*(*nrows), sizeof(double));
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shift.c:48:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
sad[i] += abs(x[j]-med);
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shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
int i, j, k;
^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c util.c -o util.o
util.c:32:32: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
y[i] = n * unif_rand() + 1;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
util.c:45:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
j = n * unif_rand();
˜ ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o maanova.so makeratio.o masvd.o shift.o util.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/maanova.buildbin-libdir/maanova/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maanova)
>>>>>>>
>>>>>>> FIXING LINKS FOR maanova.buildbin-libdir/maanova/libs//maanova.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"