maigesPack 1.24.0
Gustavo H. Esteves
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/maigesPack | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | [ OK ] | OK |
* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/maigesPack.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using options '--no-examples --no-vignettes'
* checking for file 'maigesPack/DESCRIPTION' ... OK
* this is package 'maigesPack' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'maigesPack' can be installed ... [11s/12s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... SKIPPED
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'/Users/biocbuild/bbs-2.12-bioc/meat/maigesPack.Rcheck/00check.log'
for details.
* installing *source* package 'maigesPack' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c Minfo.c -o Minfo.o
Minfo.c:46:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
distance = (double *) R_alloc((n-1), sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
Minfo.c:47:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp = (double *) R_alloc(n, sizeof(double));
˜˜˜˜˜˜˜ ^
Minfo.c:82:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp1 = (double *) R_alloc((*ns), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
Minfo.c:83:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp2 = (double *) R_alloc((*ns), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c bootstrapT.c -o bootstrapT.o
bootstrapT.c:18:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
m1 = stats_mean(x1, n1);
˜˜˜˜˜˜˜˜˜˜ ^˜
bootstrapT.c:19:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
m2 = stats_mean(x2, n2);
˜˜˜˜˜˜˜˜˜˜ ^˜
bootstrapT.c:20:29: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
s1 = stats_variance(x1, n1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
bootstrapT.c:21:29: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
s2 = stats_variance(x2, n2);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
bootstrapT.c:43:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
resP = (int *) R_alloc((*ng), sizeof(int));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:44:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
meant = (double *) R_alloc((*ng), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:45:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tstat = (double *) R_alloc((*ng), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:46:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
m_obs1 = (double *) R_alloc((*ng), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:47:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
m_obs2 = (double *) R_alloc((*ng), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:48:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
new1 = (double *) R_alloc((*n1), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:49:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
new2 = (double *) R_alloc((*n2), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:50:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp = (double *) R_alloc(nt, sizeof(double));
˜˜˜˜˜˜˜ ^˜
bootstrapT.c:51:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp1 = (double *) R_alloc((*n1), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:52:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp2 = (double *) R_alloc((*n2), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:58:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
obs1B = (double **) R_alloc((*ng), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:59:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
obs2B = (double **) R_alloc((*ng), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:63:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
obs1B[i] = (double *) R_alloc((*n1), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
bootstrapT.c:64:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
obs2B[i] = (double *) R_alloc((*n2), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
18 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c register.c -o register.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c robustCorr.c -o robustCorr.o
robustCorr.c:21:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
idx = (int *) R_alloc(n, sizeof(int));
˜˜˜˜˜˜˜ ^
robustCorr.c:22:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp = (double *) R_alloc(n, sizeof(double));
˜˜˜˜˜˜˜ ^
robustCorr.c:23:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp1 = (double *) R_alloc((n-1), sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
robustCorr.c:24:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp2 = (double *) R_alloc((n-1), sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
robustCorr.c:65:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp1 = (double *) R_alloc((*ns), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
robustCorr.c:66:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
tmp2 = (double *) R_alloc((*ns), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c stats.c -o stats.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o maigesPack.so Minfo.o bootstrapT.o register.o robustCorr.o stats.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/maigesPack.Rcheck/maigesPack/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maigesPack)