Package: trigger

Version: 1.6.0

Command: rm -rf trigger.buildbin-libdir && mkdir trigger.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh trigger_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R trigger.buildbin-libdir

StartedAt: 2013-05-01 12:58:52 -0700 (Wed, 01 May 2013)

EndedAt: 2013-05-01 12:58:58 -0700 (Wed, 01 May 2013)

EllapsedTime: 5.8 seconds

RetCode: 0

Status:  OK

PackageFile: trigger_1.6.0.tgz

PackageFileSize: 1.845 MiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=trigger.buildbin-libdir trigger_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package 'trigger' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c trigger.c -o trigger.o
trigger.c:57:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   qsort(p,*n,sizeof(*p),pdcmp);
   ˜˜˜˜˜   ^˜
trigger.c:59:36: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
   for(i=0;i<*n;i++) out[i]=p[i]-in+1;
                           ˜˜˜˜˜˜˜˜^˜
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o trigger.so trigger.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/trigger.buildbin-libdir/trigger/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'trigger'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (trigger)


>>>>>>> 
>>>>>>> FIXING LINKS FOR trigger.buildbin-libdir/trigger/libs//trigger.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "trigger.buildbin-libdir/trigger/libs//trigger.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "trigger.buildbin-libdir/trigger/libs//trigger.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "trigger.buildbin-libdir/trigger/libs//trigger.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "trigger.buildbin-libdir/trigger/libs//trigger.so"