Package: miRNATarget

Version: 0.99.2

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_0.99.2.tar.gz

StartedAt: 2013-01-17 13:11:10 -0800 (Thu, 17 Jan 2013)

EndedAt: 2013-01-17 13:12:24 -0800 (Thu, 17 Jan 2013)

EllapsedTime: 74.0 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-data-experiment/meat/miRNATarget.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘0.99.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.1Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
TBL2_HS 5.336   0.26   5.601
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.12-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘miRNATarget.Rnw’ 
** testing if installed package can be loaded

* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.024	0.004	0.030
HS_refseq_to_affy_hc_g110	0.016	0.004	0.017
HS_refseq_to_affy_hg_focus	0.044	0.004	0.047
HS_refseq_to_affy_hg_u133_plus_2	0.168	0.004	0.177
HS_refseq_to_affy_hg_u133a	0.112	0.000	0.112
HS_refseq_to_affy_hg_u133a_2	0.192	0.000	0.188
HS_refseq_to_affy_hg_u133b	0.08	0.00	0.08
HS_refseq_to_affy_hg_u95a	0.068	0.000	0.068
HS_refseq_to_affy_hg_u95av2	0.080	0.000	0.081
HS_refseq_to_affy_hg_u95b	0.052	0.000	0.054
HS_refseq_to_affy_hg_u95c	0.044	0.008	0.049
HS_refseq_to_affy_hg_u95d	0.012	0.004	0.015
HS_refseq_to_affy_hg_u95e	0.020	0.008	0.026
HS_refseq_to_affy_huex_1_0_st_v2	2.716	0.064	2.783
HS_refseq_to_affy_hugene_1_0_st_v1	0.080	0.004	0.085
HS_refseq_to_affy_hugenefl	0.020	0.008	0.030
HS_refseq_to_affy_u133_x3p	0.136	0.004	0.144
HS_refseq_to_agilent_cgh_44b	0.044	0.004	0.050
HS_refseq_to_agilent_wholegenome	0.104	0.004	0.108
HS_refseq_to_canonical_transcript_stable_id	0.104	0.012	0.118
HS_refseq_to_ccds	0.092	0.004	0.095
HS_refseq_to_codelink	0.172	0.004	0.176
HS_refseq_to_embl	0.400	0.020	0.421
HS_refseq_to_ensembl_gene_id	0.152	0.004	0.155
HS_refseq_to_ensembl_peptide_id	0.104	0.004	0.107
HS_refseq_to_ensembl_transcript_id	0.160	0.000	0.161
HS_refseq_to_entrezgene	0.140	0.004	0.144
HS_refseq_to_hgnc_id	0.084	0.000	0.084
HS_refseq_to_hgnc_symbol	0.140	0.000	0.138
HS_refseq_to_hgnc_transcript_name	0.252	0.004	0.257
HS_refseq_to_illumina_humanht_12	0.324	0.000	0.324
HS_refseq_to_illumina_humanwg_6_v1	0.152	0.004	0.157
HS_refseq_to_illumina_humanwg_6_v2	0.152	0.000	0.154
HS_refseq_to_illumina_humanwg_6_v3	0.096	0.000	0.096
HS_refseq_to_interpro	0.220	0.000	0.223
HS_refseq_to_ipi	0.208	0.000	0.208
HS_refseq_to_merops	0.012	0.000	0.010
HS_refseq_to_pdb	0.048	0.004	0.052
HS_refseq_to_pfam	0.148	0.000	0.148
HS_refseq_to_phalanx_onearray	0.148	0.004	0.152
HS_refseq_to_protein_id	0.712	0.012	0.726
HS_refseq_to_refseq_dna	0.084	0.008	0.095
HS_refseq_to_refseq_genomic	0.036	0.000	0.035
HS_refseq_to_refseq_peptide	0.120	0.004	0.125
HS_refseq_to_rfam	0.004	0.004	0.007
HS_refseq_to_rfam_gene_name	0.008	0.000	0.005
HS_refseq_to_rfam_transcript_name	0.004	0.000	0.005
HS_refseq_to_smart	0.088	0.004	0.091
HS_refseq_to_tigrfam	0.044	0.000	0.045
HS_refseq_to_ucsc	0.132	0.000	0.132
HS_refseq_to_unigene	0.104	0.000	0.103
HS_refseq_to_uniprot_genename	0.152	0.000	0.152
HS_refseq_to_wikigene_name	0.068	0.004	0.074
MM_conv_id	0.048	0.004	0.050
MM_refseq_to_affy_mg_u74a	0.072	0.000	0.074
MM_refseq_to_affy_mg_u74av2	0.032	0.000	0.031
MM_refseq_to_affy_mg_u74b	0.072	0.000	0.070
MM_refseq_to_affy_mg_u74bv2	0.020	0.000	0.027
MM_refseq_to_affy_mg_u74c	0.060	0.000	0.058
MM_refseq_to_affy_mg_u74cv2	0.012	0.004	0.014
MM_refseq_to_affy_moe430a	0.116	0.004	0.120
MM_refseq_to_affy_moe430b	0.08	0.00	0.08
MM_refseq_to_affy_moex_1_0_st_v1	1.188	0.020	1.212
MM_refseq_to_affy_mogene_1_0_st_v1	0.076	0.000	0.077
MM_refseq_to_affy_mouse430_2	0.128	0.004	0.131
MM_refseq_to_affy_mouse430a_2	0.160	0.000	0.162
MM_refseq_to_affy_mu11ksuba	0.060	0.012	0.071
MM_refseq_to_affy_mu11ksubb	0.060	0.000	0.061
MM_refseq_to_agilent_wholegenome	0.140	0.000	0.138
MM_refseq_to_canonical_transcript_stable_id	0.120	0.004	0.123
MM_refseq_to_ccds	0.116	0.000	0.115
MM_refseq_to_codelink	0.116	0.000	0.119
MM_refseq_to_embl	0.381	0.016	0.398
MM_refseq_to_ensembl_gene_id	0.060	0.000	0.062
MM_refseq_to_ensembl_peptide_id	0.08	0.00	0.08
MM_refseq_to_ensembl_transcript_id	0.080	0.004	0.086
MM_refseq_to_entrezgene	0.084	0.004	0.087
MM_refseq_to_fantom	0.116	0.004	0.125
MM_refseq_to_illumina_mousewg_6_v1	0.108	0.004	0.111
MM_refseq_to_illumina_mousewg_6_v2	0.276	0.000	0.275
MM_refseq_to_interpro	0.148	0.004	0.151
MM_refseq_to_ipi	0.104	0.008	0.115
MM_refseq_to_merops	0.008	0.000	0.009
MM_refseq_to_mgi_id	0.064	0.000	0.063
MM_refseq_to_mgi_symbol	0.096	0.000	0.095
MM_refseq_to_mgi_transcript_name	0.104	0.000	0.105
MM_refseq_to_pdb	0.044	0.000	0.044
MM_refseq_to_pfam	0.108	0.004	0.109
MM_refseq_to_phalanx_onearray	0.060	0.000	0.057
MM_refseq_to_protein_id	0.268	0.004	0.271
MM_refseq_to_refseq_dna	0.108	0.000	0.107
MM_refseq_to_refseq_peptide	0.132	0.000	0.134
MM_refseq_to_rfam	0.060	0.000	0.059
MM_refseq_to_rfam_gene_name	0.072	0.000	0.070
MM_refseq_to_rfam_transcript_name	0.14	0.00	0.14
MM_refseq_to_smart	0.084	0.004	0.088
MM_refseq_to_tigrfam	0.040	0.004	0.048
MM_refseq_to_ucsc	0.112	0.000	0.111
MM_refseq_to_unigene	0.132	0.008	0.144
MM_refseq_to_uniprot_genename	0.132	0.004	0.137
MM_refseq_to_wikigene_name	0.128	0.004	0.132
TBL2	2.768	0.092	2.860
TBL2_HS	5.336	0.260	5.601
TBL2_MM	2.428	0.180	2.609
conv_id	0.008	0.000	0.008
id_conv	0.064	0.000	0.064