AnnotationDbi 1.6.1
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/AnnotationDbi | | Last Changed Rev: 40135 / Revision: 42512 | | Last Changed Date: 2009-06-15 09:52:36 -0700 (Mon, 15 Jun 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/AnnotationDbi.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.6.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package ‘AnnotationDbi’ ...
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
*** installing help indices
>>> Building/Updating help pages for package 'AnnotationDbi'
Formats: text html latex example
Note: removing empty section \value in file 'AnnDbBimap-envirAPI.Rd'
AnnDbBimap-envirAPI text html latex example
AnnDbObj-class text html latex example
Note: removing empty section \details in file 'AnnDbPkg-checker.Rd'
AnnDbPkg-checker text html latex example
Note: removing empty section \details in file 'AnnDbPkg-maker.Rd'
AnnDbPkg-maker text html latex example
AnnotationDbi-internals text html latex
Bimap-direction text html latex example
Bimap-keys text html latex example
Bimap-toTable text html latex example
Bimap text html latex example
Note: removing empty section \value in file 'BimapFormatting.Rd'
BimapFormatting text html latex example
GOTerms-class text html latex example
available.db0pkgs text html latex example
createSimpleBimap text html latex example
getProbeDataAffy text html latex example
getProbeData_1lq text html latex example
inpIDMapper text html latex example
makeProbePackage text html latex example
make_eg_to_go_map text html latex example
print.probetable text html latex example
sqlForge-makeARABIDOPSISCHIPDB text html latex example
sqlForge-makeCHIPDB text html latex example
sqlForge-makeYEASTDB text html latex example
sqlForge-popARABIDOPSISCHIPDB text html latex example
sqlForge-popCHIPDB text html latex example
sqlForge-popDB text html latex example
sqlForge-popYEASTCHIPDB text html latex example
sqlForge-wrapDBPackages text html latex example
toSQLStringSet text html latex example
unlist2 text html latex example
** building package indices ...
* DONE (AnnotationDbi)