BufferedMatrixMethods 1.8.0
B. M. Bolstad
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/BufferedMatrixMethods | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ...Can't unlink file E:/biocbld/bbs-2.4-bioc/tmpdir/Rd2dvi216819757/Rd2.toc: Permission denied at E:\biocbld\bbs-2.4-bioc\R/bin/check line 2652
Can't remove directory E:/biocbld/bbs-2.4-bioc/tmpdir/Rd2dvi216819757: Directory not empty at E:\biocbld\bbs-2.4-bioc\R/bin/check line 2652
OK
* Installing *source* package 'BufferedMatrixMethods' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -I"e:/biocbld/bbs-2.4-bioc/R/library/BufferedMatrix/include" -O3 -Wall -std=gnu99 -c init_package.c -o init_package.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -I"e:/biocbld/bbs-2.4-bioc/R/library/BufferedMatrix/include" -O3 -Wall -std=gnu99 -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:343: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:377: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:592: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1150: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:452: warning: 'min' defined but not used
gcc -shared -s -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'BufferedMatrixMethods'
Formats: text html latex example chm
BM_affyDataInput text html latex chm
BM_justRMA text html latex chm
BM_readcelfiles text html latex chm
rmapreprocess.bufferedmatrix text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\BUFFER~2.RCH\00_PKG~1\BUFFER~1\chm\BufferedMatrixMethods.chm
Compile time: 0 minutes, 8 seconds
5 Topics
14 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\BUFFER~2.RCH\00_PKG~1\BUFFER~1\chm\BufferedMatrixMethods.chm, 19,884 bytes
Compression decreased file by 1,988 bytes.
** building package indices ...
** MD5 sums
* DONE (BufferedMatrixMethods)