GLAD 2.0.0
Philippe Hupe
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GLAD | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | [ OK ] |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
INSTALLATION WITH 'R CMD INSTALL --preclean --library=GLAD.buildbin-libdir GLAD_2.0.0.tar.gz'
* Installing *source* package ‘GLAD’ ...
Configuring variable environment
OS is: Darwin
src/Makevars has been created
PKG_CFLAGS+=-DIS_MAC_OS
PKG_CXXFLAGS+=-DIS_MAC_OS
variable environment completed
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -DIS_MAC_OS -fPIC -mtune=core2 -g -O2 -c HaarSeg.c -o HaarSeg.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -DIS_MAC_OS -fPIC -mtune=core2 -g -O2 -c distance.c -o distance.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -DIS_MAC_OS -fPIC -mtune=core2 -g -O2 -c glad-function.c -o glad-function.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -DIS_MAC_OS -fPIC -mtune=core2 -g -O2 -c glad.cpp -o glad.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -DIS_MAC_OS -fPIC -mtune=core2 -g -O2 -c hclust.c -o hclust.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -DIS_MAC_OS -fPIC -mtune=core2 -g -O2 -c laws.c -o laws.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so HaarSeg.o distance.o glad-function.o glad.o hclust.o laws.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'GLAD'
Formats: text html latex example
ChrNumeric text html latex example
ColorBar text html latex example
GLAD-internal text html latex
arrayCGH text html latex example
arrayPersp text html latex example
arrayPlot text html latex example
as.data.frame.profileCGH text html latex example
as.profileCGH text html latex example
bladder text html latex example
cytoband text html latex example
daglad text html latex example
glad text html latex example
hclust text html latex example
kernel text html latex
myPalette text html latex example
plotProfile text html latex example
profileCGH text html latex example
snijders text html latex example
tkdaglad text html latex example
veltman text html latex example
** building package indices ...
* DONE (GLAD)
INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=GLAD.buildbin-libdir --libs-only GLAD_2.0.0.tar.gz'
* Installing *source* package ‘GLAD’ ...
Configuring variable environment
OS is: Darwin
src/Makevars has been created
PKG_CFLAGS+=-DIS_MAC_OS
PKG_CXXFLAGS+=-DIS_MAC_OS
variable environment completed
** libs
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -DIS_MAC_OS -fPIC -g -O2 -c HaarSeg.c -o HaarSeg.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -DIS_MAC_OS -fPIC -g -O2 -c distance.c -o distance.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -DIS_MAC_OS -fPIC -g -O2 -c glad-function.c -o glad-function.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -DIS_MAC_OS -fPIC -g -O2 -c glad.cpp -o glad.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -DIS_MAC_OS -fPIC -g -O2 -c hclust.c -o hclust.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -DIS_MAC_OS -fPIC -g -O2 -c laws.c -o laws.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so HaarSeg.o distance.o glad-function.o glad.o hclust.o laws.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (GLAD)