GeneRegionScan 1.0.0
Lasse Folkersen
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GeneRegionScan | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/GeneRegionScan.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneRegionScan/DESCRIPTION' ... OK
* this is package 'GeneRegionScan' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneRegionScan' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'GeneRegionScan' ...
** R
** data
** exec
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
** help
*** installing help indices
>>> Building/Updating help pages for package 'GeneRegionScan'
Formats: text html latex example chm
Nondocumented-objects text html latex chm
ProbeLevelSet-class text html latex chm
addSnpPdata text html latex example chm
checkForFileInPath text html latex example chm
doProbeLinear text html latex example chm
doProbeTTest text html latex example chm
exampleProbeLevelSet text html latex example chm
excludeDoubleMatchingProbes text html latex example chm
exonStructure text html latex example chm
findSequenceInGenome text html latex example chm
geneRegionScan text html latex example chm
genomic text html latex chm
getLocalMetaprobeIntensities text html latex example chm
getLocalProbeIntensities text html latex example chm
getMetaprobesetsFromRegionOfInter text html latex example chm
getProbeLevelAnnotationForExonArr text html latex example chm
getProbesetsFromRegionOfInterest text html latex example chm
getSequence text html latex example chm
getServerProbeIntensities text html latex example chm
mrna text html latex chm
plotCoexpression text html latex example chm
plotOnGene text html latex example chm
plotStatistics text html latex chm
readGeneInput text html latex example chm
translateSampleNames text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\GENERE~2.RCH\00_PKG~1\GENERE~1\chm\GeneRegionScan.chm
Compile time: 0 minutes, 2 seconds
26 Topics
125 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\GENERE~2.RCH\00_PKG~1\GENERE~1\chm\GeneRegionScan.chm, 57,997 bytes
Compression decreased file by 53,259 bytes.
** building package indices ...
** MD5 sums
* DONE (GeneRegionScan)