GeneSelector 1.4.0
Martin Slawski
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GeneSelector | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/GeneSelector.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneSelector/DESCRIPTION' ... OK
* this is package 'GeneSelector' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneSelector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
RankingPermutation,matrix-numeric: no visible binding for global
variable 'test'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'GeneSelector' ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "toplist": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "toplist": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "GenerateBootMatrix": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
Arguments of method and generic are not in the same order
** help
*** installing help indices
>>> Building/Updating help pages for package 'GeneSelector'
Formats: text html latex example chm
AdjustPvalues text html latex example chm
AggregateBayes-methods text html latex chm
AggregateBayes text html latex example chm
AggregatePCA-methods text html latex chm
AggregatePCA text html latex chm
AggregatePenalty-methods text html latex chm
AggregatePenalty text html latex chm
AggregateSimple-methods text html latex chm
AggregateSimple text html latex example chm
AggregatedRanking-class text html latex chm
BootMatrix-class text html latex chm
CombinedRanking-class text html latex chm
FoldMatrix-class text html latex chm
GeneRanking-class text html latex chm
GeneSelector-methods text html latex chm
GeneSelector-package text html latex chm
GeneSelector text html latex example chm
GenerateBootMatrix-methods text html latex chm
GenerateBootMatrix text html latex example chm
GenerateFoldMatrix-methods text html latex chm
GenerateFoldMatrix text html latex example chm
GetAlpha text html latex example chm
GetRepeatRanking-methods text html latex chm
GetRepeatRanking text html latex example chm
GetStabilityGLM-methods text html latex chm
GetStabilityGLM text html latex chm
GetStabilityLm-methods text html latex chm
GetStabilityLm text html latex example chm
GetStabilityOverlap-methods text html latex chm
GetStabilityOverlap text html latex example chm
GetStabilityPCA-methods text html latex chm
GetStabilityPCA text html latex chm
HeatmapMethods-methods text html latex chm
HeatmapMethods text html latex example chm
PCAMethods-methods text html latex chm
PCAMethods text html latex chm
PCAMethodsResult-class text html latex chm
RankingBaldiLong-methods text html latex chm
RankingBaldiLong text html latex example chm
RankingBstat-methods text html latex chm
RankingBstat text html latex example chm
RankingEbam-methods text html latex chm
RankingEbam text html latex example chm
RankingFC-methods text html latex chm
RankingFC text html latex example chm
RankingFoxDimmic-methods text html latex chm
RankingFoxDimmic text html latex example chm
RankingGap-methods text html latex chm
RankingGap text html latex example chm
RankingLimma-methods text html latex chm
RankingLimma text html latex example chm
RankingPermutation-methods text html latex chm
RankingPermutation text html latex example chm
RankingSam-methods text html latex chm
RankingSam text html latex example chm
RankingShrinkageT-methods text html latex chm
RankingShrinkageT text html latex example chm
RankingSoftthresholdT-methods text html latex chm
RankingSoftthresholdT text html latex example chm
RankingTstat-methods text html latex chm
RankingTstat text html latex example chm
RankingWelchT-methods text html latex chm
RankingWelchT text html latex example chm
RankingWilcEbam-methods text html latex chm
RankingWilcEbam text html latex example chm
RankingWilcoxon-methods text html latex chm
RankingWilcoxon text html latex example chm
RecoveryScore text html latex example chm
RepeatRanking-class text html latex chm
StabilityGLM-class text html latex chm
StabilityLm-class text html latex chm
StabilityOverlap-class text html latex chm
StabilityPCA-class text html latex chm
internals text html latex chm
join-methods text html latex chm
join text html latex chm
plot,AggregatedRanking text html latex chm
plot,CombinedRanking text html latex chm
plot,RepeatRanking text html latex chm
plot,StabilityLm text html latex chm
plot,StabilityOverlap text html latex chm
samplingcontrol text html latex chm
summary,GeneRanking text html latex chm
summary,StabilityOverlap text html latex chm
toplist-methods text html latex chm
toydata text html latex example chm
variance,RepeatRanking text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\GENESE~2.RCH\00_PKG~1\GENESE~1\chm\GeneSelector.chm
Compile time: 0 minutes, 1 second
88 Topics
799 Local links
53 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\GENESE~2.RCH\00_PKG~1\GENESE~1\chm\GeneSelector.chm, 96,409 bytes
Compression decreased file by 221,086 bytes.
** building package indices ...
** MD5 sums
* DONE (GeneSelector)