GeneticsPed 1.6.0
The R Genetics Project
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GeneticsPed | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* Installing *source* package 'GeneticsPed' ...
Using auto-selected zip options '--use-zip-help'
** libs
making DLL ...
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c ainverse.cc -o ainverse.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c eibd.cc -o eibd.o
gfortran -O3 -c ggmatmult.f -o ggmatmult.o
gfortran -O3 -c gpi.f -o gpi.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c inbreed.cc -o inbreed.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c inverseAdditive.cc -o inverseAdditive.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c meuwissen.cc -o meuwissen.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c pedSort.cc -o pedSort.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c pedtemplate.cc -o pedtemplate.o
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c register.cc -o register.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c sargolzaei.c -o sargolzaei.o
sargolzaei.c: In function 'sargolzaei':
sargolzaei.c:96: warning: comparison between pointer and integer
sargolzaei.c:19: warning: 'S' may be used uninitialized in this function
sargolzaei.c:19: warning: 'MIP' may be used uninitialized in this function
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c sortped.cc -o sortped.o
g++ -shared -s -o GeneticsPed.dll tmp.def ainverse.o eibd.o ggmatmult.o gpi.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sargolzaei.o sortped.o -lgfortran -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Attaching package: 'gdata'
The following object(s) are masked from package:utils :
object.size
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from package:utils :
combn
Loading required package: gtools
Loading required package: MASS
Loading required package: mvtnorm
NOTE: THIS PACKAGE IS NOW OBSOLETE.
The R-Genetics project has developed an set of enhanced genetics
packages to replace 'genetics'. Please visit the project homepage
at http://rgenetics.org for informtion.
Attaching package: 'genetics'
The following object(s) are masked from package:base :
%in%,
as.factor,
order
** help
*** installing help indices
>>> Building/Updating help pages for package 'GeneticsPed'
Formats: text html latex example chm
TDT text html latex example chm
check text html latex example chm
datasets text html latex example chm
extend text html latex example chm
family text html latex example chm
founder text html latex example chm
geneContribution text html latex example chm
generatePedigree text html latex example chm
generation text html latex example chm
gpi text html latex example chm
gpiUtil text html latex example chm
inbreeding text html latex example chm
model.matrix text html latex example chm
nIndividual text html latex example chm
pedigree text html latex example chm
prune text html latex example chm
relationshipAdditive text html latex example chm
removeIndividual text html latex example chm
sort.pedigree text html latex example chm
summary.pedigree text html latex example chm
undocumented text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpvqRWOH\R.INSTALL678418be\GeneticsPed\chm\GeneticsPed.chm
Compile time: 0 minutes, 1 second
22 Topics
109 Local links
13 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpvqRWOH\R.INSTALL678418be\GeneticsPed\chm\GeneticsPed.chm, 55,812 bytes
Compression decreased file by 47,298 bytes.
** building package indices ...
** MD5 sums
packaged installation of 'GeneticsPed' as GeneticsPed_1.6.0.zip
* DONE (GeneticsPed)