GraphAlignment 1.6.0
Joern P. Meier
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GraphAlignment | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'GraphAlignment/DESCRIPTION' ... OK
* preparing 'GraphAlignment':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GraphAlignment' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_alloc.c -o GA_alloc.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_matrix.c -o GA_matrix.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_matrix_R.c -o GA_matrix_R.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_message.c -o GA_message.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_vector.c -o GA_vector.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function 'GA_clamp_mode_from_R':
GA_vector_R.c:139: warning: unused variable 'size'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function 'GA_encode_directed_graph':
GraphAlignment.c:138: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c:159: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c: In function 'GA_directed_mode_from_R':
GraphAlignment.c:264: warning: unused variable 'size'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c lap.c -o lap.o
lap.c: In function 'LAP_lap':
lap.c:65: warning: 'min' may be used uninitialized in this function
lap.c:64: warning: 'last' may be used uninitialized in this function
gcc -shared -s -o GraphAlignment.dll tmp.def GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'GraphAlignment'
Formats: text html latex example chm
AlignNetworks text html latex example chm
AlignedPairs text html latex example chm
AnalyzeAlignment text html latex example chm
ComputeLinkParameters text html latex example chm
ComputeM text html latex example chm
ComputeNodeParameters text html latex example chm
ComputeScores text html latex example chm
CreateScoreMatrix text html latex example chm
EncodeDirectedGraph text html latex example chm
GenerateExample text html latex example chm
GetBinNumber text html latex example chm
InitialAlignment text html latex example chm
InvertPermutation text html latex example chm
LinearAssignment text html latex example chm
MatrixToBin text html latex example chm
Permute text html latex example chm
Trace text html latex example chm
VectorToBin text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\meat\GraphAlignment\chm\GraphAlignment.chm
Compile time: 0 minutes, 0 seconds
19 Topics
75 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\meat\GraphAlignment\chm\GraphAlignment.chm, 32,337 bytes
Compression decreased file by 26,265 bytes.
** building package indices ...
** MD5 sums
* DONE (GraphAlignment)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GraphAlignment_1.6.0.tar.gz'