HilbertVisGUI 1.2.0
Simon Anders
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/HilbertVisGUI | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... WARNING
Non-portable flags in variable 'PKG_CFLAGS':
-mms-bitfields
Non-portable flags in variable 'PKG_CPPFLAGS':
-mms-bitfields
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.4-bioc/meat/HilbertVisGUI.Rcheck/00check.log
for details
* Installing *source* package 'HilbertVisGUI' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O3 -Wall -std=gnu99 -c R_env_prot.c -o R_env_prot.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c R_interface.cc -o R_interface.o
In file included from e:/biocbld/bbs-2.4-bioc/R/include/R.h:50,
from R_interface.cc:30:
e:/biocbld/bbs-2.4-bioc/R/include/R_ext/RS.h:43:1: warning: "ERROR" redefined
In file included from c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/../../../../include/windows.h:52,
from R_interface.cc:25:
c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:524: warning: comparison between signed and unsigned integer expressions
R_interface.cc:523: warning: unused variable 'palette_level'
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702: warning: comparison between signed and unsigned integer expressions
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:168: warning: 'val' may be used uninitialized in this function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:115: warning: 'val' may be used uninitialized in this function
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c colorizers.cc -o colorizers.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c display.cc -o display.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c ruler.cc -o ruler.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -c window.cc -o window.o
g++ -shared -s -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -LC:/gtkmm/lib -lgtkmm-2.4 -lgiomm-2.4 -lgdkmm-2.4 -latkmm-1.6 -lgtk-win32-2.0 -lpangomm-1.4 -lcairomm-1.0 -lglibmm-2.4 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lgdk_pixbuf-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: lattice
** help
*** installing help indices
>>> Building/Updating help pages for package 'HilbertVisGUI'
Formats: text html latex example chm
dotsapply text html latex chm
hilbertDisplay text html latex example chm
hilbertDisplayThreeChannel text html latex chm
simpleLinPlot text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\HILBER~2.RCH\00_PKG~1\HILBER~1\chm\HilbertVisGUI.chm
Compile time: 0 minutes, 0 seconds
5 Topics
18 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\HILBER~2.RCH\00_PKG~1\HILBER~1\chm\HilbertVisGUI.chm, 25,316 bytes
Compression increased file by 3,450 bytes.
** building package indices ...
** MD5 sums
* DONE (HilbertVisGUI)