ITALICS 2.4.0
Guillem Rigaill
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/ITALICS | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/ITALICS.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'ITALICS/DESCRIPTION' ... OK
* this is package 'ITALICS' version '2.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ITALICS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package ‘ITALICS’ ...
** R
** inst
** preparing package for lazy loading
[1] "Have fun with GLAD"
[1] "For smoothing it is possible to use either"
[1] "the AWS algorithm (Polzehl and Spokoiny, 2002)"
[1] "or the HaarSeg algorithm (Ben-Yaacov and Eldar, 2008)"
[1] ""
[1] "If you use the package with AWS, please cite:"
[1] "Hupe et al. (2004) and Polzehl and Spokoiny (2002)"
[1] ""
[1] "If you use the package with HaarSeg, please cite:"
[1] "Hupe et al. (2004) and (Ben-Yaacov and Eldar, 2008)"
Loading required package: oligoClasses
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: preprocessCore
Welcome to oligo version 1.8.3
Loading required package: RSQLite
Loading required package: DBI
** help
*** installing help indices
>>> Building/Updating help pages for package 'ITALICS'
Formats: text html latex example
Note: ignoring empty \keyword entries in file 'GLAD.GLAD.Rd'
GLAD.GLAD text html latex
Note: ignoring empty \keyword entries in file 'ITALICSNew.Rd'
ITALICSNew text html latex example
Note: ignoring empty \keyword entries in file 'ITALICSTrain.Rd'
ITALICSTrain text html latex
Note: ignoring empty \keyword entries in file 'Model.GetConfDat.Rd'
Model.GetConfDat text html latex
Note: ignoring empty \keyword entries in file 'Model.GetCorrection.Rd'
Model.GetCorrection text html latex
Note: ignoring empty \keyword entries in file 'Model.GetEffet.Rd'
Model.GetEffet text html latex
Note: ignoring empty \keyword entries in file 'Model.GetModel.Rd'
Model.GetModel text html latex
Note: ignoring empty \keyword entries in file 'Model.GetResidu.Rd'
Model.GetResidu text html latex
Note: ignoring empty \keyword entries in file 'New.AddInfo.Rd'
New.AddInfo text html latex
Note: ignoring empty \keyword entries in file 'New.fromQuartetToSnp.Rd'
Note: removing empty section \examples in file 'New.fromQuartetToSnp.Rd'
New.fromQuartetToSnp text html latex
Note: ignoring empty \keyword entries in file 'New.fromSnpToQuartet.Rd'
New.fromSnpToQuartet text html latex
Note: ignoring empty \keyword entries in file 'New.getQuartet.Rd'
New.getQuartet text html latex
Note: ignoring empty \keyword entries in file 'New.getSnpInfo.Rd'
New.getSnpInfo text html latex
Note: ignoring empty \keyword entries in file 'New.readQuartetCopyNb.Rd'
New.readQuartetCopyNb text html latex
** building package indices ...
* DONE (ITALICS)