KCsmart 2.3.2
Jorma de Ronde
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/KCsmart | | Last Changed Rev: 40893 / Revision: 42512 | | Last Changed Date: 2009-07-29 05:02:49 -0700 (Wed, 29 Jul 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/KCsmart.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KCsmart/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KCsmart' version '2.3.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'KCsmart' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'KCsmart' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: splines
Creating a new generic function for "sort" in "KCsmart"
Creating a new generic function for "unlist" in "KCsmart"
Creating a new generic function for "write.table" in "KCsmart"
** help
*** installing help indices
>>> Building/Updating help pages for package 'KCsmart'
Formats: text html latex example chm
KCData-class text html latex chm
KCsmart-package text html latex example chm
KcghData-class text html latex chm
KcghDataMirror-class text html latex chm
KcghDataSplit-class text html latex chm
KcghDataSum-class text html latex chm
Note: removing empty section \note in file 'calcSpm.Rd'
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Note: removing empty section \note in file 'calcSpm.Rd'
Note: removing empty section \references in file 'calcSpm.Rd'
calcSpm text html latex example chm
Note: removing empty section \note in file 'calcSpmCollection.Rd'
Note: removing empty section \references in file 'calcSpmCollection.Rd'
Note: removing empty section \note in file 'calcSpmCollection.Rd'
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calcSpmCollection text html latex example chm
compKc-class text html latex example chm
compKcSigRegions-class text html latex example chm
Note: removing empty section \note in file 'compareSpmCollection.Rd'
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Note: removing empty section \note in file 'compareSpmCollection.Rd'
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compareSpmCollection text html latex example chm
findSigLevelFdr text html latex example chm
findSigLevelTrad text html latex example chm
Note: removing empty section \note in file 'getSigRegionsCompKC.Rd'
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Note: removing empty section \note in file 'getSigRegionsCompKC.Rd'
Note: removing empty section \references in file 'getSigRegionsCompKC.Rd'
getSigRegionsCompKC text html latex example chm
Note: removing empty section \note in file 'getSigSegments.Rd'
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getSigSegments text html latex example chm
hsMirrorLocs text html latex chm
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hsSampleData text html latex chm
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idPoints text html latex example chm
mmMirrorLocs text html latex chm
Note: removing empty section \details in file 'plot.Rd'
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plot text html latex example chm
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plotScaleSpace text html latex example chm
probeAnnotation-class text html latex chm
samplePointMatrix-class text html latex example chm
sigSegments-class text html latex example chm
spmCollection-class text html latex example chm
Note: removing empty section \value in file 'write.table.Rd'
Note: removing empty section \note in file 'write.table.Rd'
Note: removing empty section \value in file 'write.table.Rd'
Note: removing empty section \note in file 'write.table.Rd'
write.table text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\KCSMAR~1.RCH\00_PKG~1\KCsmart\chm\KCsmart.chm
Compile time: 0 minutes, 1 second
27 Topics
105 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\KCSMAR~1.RCH\00_PKG~1\KCsmart\chm\KCsmart.chm, 43,830 bytes
Compression decreased file by 45,445 bytes.
** building package indices ...
** MD5 sums
* DONE (KCsmart)