Package: LPEadj

Version: 1.4.0

Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes LPEadj_1.4.0.tar.gz

StartedAt: 2009-10-20 18:01:49 -0700 (Tue, 20 Oct 2009)

EndedAt: 2009-10-20 18:02:15 -0700 (Tue, 20 Oct 2009)

EllapsedTime: 25.5 seconds

RetCode: 0

Status: OK

CheckDir: LPEadj.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/LPEadj.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'LPEadj/DESCRIPTION' ... OK
* this is package 'LPEadj' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LPEadj' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* Installing *source* package ‘LPEadj’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'LPEadj'
     Formats: text html latex example 
  adjBaseOlig.error                 text    html    latex   example
  adjBaseOlig.error.step1           text    html    latex   example
  adjBaseOlig.error.step2           text    html    latex   example
  calculateLpeAdj                   text    html    latex   example
  lpeAdj                            text    html    latex   example
** building package indices ...
* DONE (LPEadj)