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Package 184/319HostnameOS / ArchBUILDCHECKBUILD BIN
MassSpecWavelet 1.10.0
Pan Du
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/MassSpecWavelet
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: MassSpecWavelet
Version: 1.10.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes MassSpecWavelet_1.10.0.tar.gz
StartedAt: 2009-10-20 17:38:01 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:39:19 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 78.0 seconds
RetCode: 0
Status: OK
CheckDir: MassSpecWavelet.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/MassSpecWavelet.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MassSpecWavelet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassSpecWavelet' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassSpecWavelet' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

MassSpecWavelet.Rcheck/00install.out:

* Installing *source* package 'MassSpecWavelet' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c convolve2.c -o convolve2.o
gcc -shared -s -o MassSpecWavelet.dll tmp.def convolve2.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'MassSpecWavelet'
     Formats: text html latex example chm 
  MassSpecWavelet.package           text    html    latex   example chm
  cwt                               text    html    latex   example chm
  exampleMS                         text    html    latex           chm
  extendLength                      text    html    latex   example chm
  extendNBase                       text    html    latex   example chm
  getLocalMaximumCWT                text    html    latex   example chm
  getRidge                          text    html    latex   example chm
  getRidgeLength                    text    html    latex           chm
Note: removing empty section \examples in file 'getRidgeValue.Rd'
Note: removing empty section \examples in file 'getRidgeValue.Rd'
  getRidgeValue                     text    html    latex           chm
  identifyMajorPeaks                text    html    latex   example chm
  localMaximum                      text    html    latex   example chm
  mzInd2vRange                      text    html    latex           chm
  mzV2indRange                      text    html    latex           chm
  peakDetectionCWT                  text    html    latex   example chm
  plotLocalMax                      text    html    latex   example chm
  plotPeak                          text    html    latex   example chm
  plotRidgeList                     text    html    latex   example chm
Note: removing empty section \examples in file 'sav.gol.Rd'
Note: removing empty section \examples in file 'sav.gol.Rd'
  sav.gol                           text    html    latex           chm
Note: removing empty section \details in file 'smoothDWT.Rd'
Note: removing empty section \references in file 'smoothDWT.Rd'
Note: removing empty section \examples in file 'smoothDWT.Rd'
Note: removing empty section \details in file 'smoothDWT.Rd'
Note: removing empty section \references in file 'smoothDWT.Rd'
Note: removing empty section \examples in file 'smoothDWT.Rd'
  smoothDWT                         text    html    latex           chm
  tuneInPeakInfo                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\MASSSP~1.RCH\00_PKG~1\MASSSP~1\chm\MassSpecWavelet.chm


Compile time: 0 minutes, 0 seconds
21	Topics
88	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\MASSSP~1.RCH\00_PKG~1\MASSSP~1\chm\MassSpecWavelet.chm, 35,634 bytes
Compression decreased file by 30,204 bytes.
** building package indices ...
** MD5 sums
* DONE (MassSpecWavelet)