PCpheno 1.6.0
Nolwenn Le Meur
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/PCpheno | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/PCpheno.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PCpheno/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PCpheno' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PCpheno' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'PCpheno' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO.db
Loading required package: DBI
Loading required package: RpsiXML
Loading required package: annotate
Loading required package: graph
Loading required package: RBGL
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: addNode
Loading required package: apComplex
Loading required package: lattice
Loading required package: ppiData
Loading required package: Rgraphviz
Loading required package: grid
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Warning in namespaceImportFrom(self, asNamespace(ns), allVars, allFuns, :
replacing previous import: geneIds
** help
*** installing help indices
>>> Building/Updating help pages for package 'PCpheno'
Formats: text html latex example
CoHyperGParams-class text html latex
CoHyperGResult-class text html latex example
Dudley text html latex example
Giaever text html latex example
HI text html latex example
KEGG2SCISI text html latex example
Kastenmayer text html latex example
Lesage text html latex example
Osterberg text html latex example
PCpheno.package text html latex
SGDphenoL text html latex example
YEASTOHNOLOG text html latex example
buildFDMat text html latex example
categoryToEntrezBuilder text html latex example
complexStatus text html latex example
deResult-class text html latex example
densityEstimate text html latex example
getDescr text html latex example
getFDgene text html latex example
graphTheory text html latex example
gtResult-class text html latex example
overlap text html latex example
plot text html latex example
ppiInteraction text html latex example
reduceM text html latex example
testResult-class text html latex
truncName text html latex example
** building package indices ...
* DONE (PCpheno)