PGSEA 1.12.0
Karl Dykema
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/PGSEA | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | [ ERROR ] | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'PGSEA/DESCRIPTION' ... OK
* preparing 'PGSEA':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'PGSEA' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
*** installing help indices
>>> Building/Updating help pages for package 'PGSEA'
Formats: text html latex example
GOLUBmcs text html latex example
PGSEA text html latex example
VAIgsc text html latex example
VAImcs text html latex example
aggregateExprs text html latex example
convertSmc text html latex example
editSmc text html latex example
go2smc text html latex example
kegg2smc text html latex example
nbEset text html latex example
readGmt text html latex example
readSmc text html latex example
scanSmc text html latex example
smcPlot text html latex example
writeGmt text html latex example
writeSmc text html latex example
** building package indices ...
* DONE (PGSEA)
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: org.Hs.eg.db
Loading required package: DBI
Loading required package: GO.db
Loading required package: GSEABase
Loading required package: annotate
Loading required package: graph
Loading required package: RCurl
Loading required package: bitops
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE7023/GSE7023_series_matrix.txt.gz'
Error: processing vignette 'PGSEA2.Rnw' failed with diagnostics:
chunk 1
Error in download.file(sprintf("ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/%s/%s", :
cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/GSE7023/GSE7023_series_matrix.txt.gz'
Execution halted