RBGL 1.20.0
Li Long
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/RBGL | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* running cleanup
removing exploded boost header source...
* installing the package to re-build vignettes
* Installing *source* package ‘RBGL’ ...
untarring boost include tree...
** libs
** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c bbc.cpp -o bbc.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c cliques.cpp -o cliques.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c clusteringCoef.cpp -o clusteringCoef.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c dominatorTree.cpp -o dominatorTree.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c hcs.cpp -o hcs.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c incrConnComp.cpp -o incrConnComp.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c interfaces.cpp -o interfaces.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c layout.cpp -o layout.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c minST.cpp -o minST.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c mincut.cpp -o mincut.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c ordering.cpp -o ordering.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c shortestPath.cpp -o shortestPath.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c sna.cpp -o sna.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c transitive_closure.cpp -o transitive_closure.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -IboostIncl -fPIC -mtune=core2 -g -O2 -c wavefront.cpp -o wavefront.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'RBGL'
Formats: text html latex example
FileDep text html latex example
RBGL.overview text html latex
Note: removing empty section \value in file 'astarSearch.Rd'
Note: removing empty section \seealso in file 'astarSearch.Rd'
astarSearch text html latex example
Note: removing empty section \seealso in file 'bandwidth.Rd'
bandwidth text html latex example
bccluster text html latex example
bellman.ford.sp text html latex example
betweenness text html latex example
bfs text html latex example
Note: removing empty section \seealso in file 'biConnComp.Rd'
biConnComp text html latex example
Note: removing empty section \value in file 'boyerMyrvoldPlanarityTest.Rd'
Note: removing empty section \details in file 'boyerMyrvoldPlanarityTest.Rd'
Note: removing empty section \examples in file 'boyerMyrvoldPlanarityTest.Rd'
boyerMyrvoldPlanarityTest text html latex
Note: removing empty section \value in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \details in file 'chrobakPayneStraightLineDrawing.Rd'
Note: removing empty section \examples in file 'chrobakPayneStraightLineDrawing.Rd'
chrobakPayneStraightLineDrawing text html latex
clusteringCoef text html latex example
clusteringCoefAppr text html latex example
Note: removing empty section \seealso in file 'coloring.Rd'
coloring text html latex example
connectedComp text html latex example
dag.sp text html latex example
dijkstra.sp text html latex example
Note: removing empty section \seealso in file 'dominatorTree.Rd'
dominatorTree text html latex example
edgeConn text html latex example
Note: removing empty section \value in file 'edmondsMaxCardinalityMatching.Rd'
Note: removing empty section \details in file 'edmondsMaxCardinalityMatching.Rd'
Note: removing empty section \examples in file 'edmondsMaxCardinalityMatching.Rd'
edmondsMaxCardinalityMatching text html latex
extractPath text html latex example
floyd.warshall.all.pairs.sp text html latex example
Note: removing empty section \seealso in file 'gprofile.Rd'
gprofile text html latex example
graphGenerator text html latex example
highlyConnSG text html latex example
incrConnComp text html latex example
Note: removing empty section \seealso in file 'is.triangulated.Rd'
is.triangulated text html latex example
Note: removing empty section \value in file 'isKuratowskiSubgraph.Rd'
Note: removing empty section \details in file 'isKuratowskiSubgraph.Rd'
Note: removing empty section \examples in file 'isKuratowskiSubgraph.Rd'
isKuratowskiSubgraph text html latex
Note: removing empty section \value in file 'isStraightLineDrawing.Rd'
Note: removing empty section \details in file 'isStraightLineDrawing.Rd'
Note: removing empty section \examples in file 'isStraightLineDrawing.Rd'
isStraightLineDrawing text html latex
Note: removing empty section \seealso in file 'isomorphism.Rd'
isomorphism text html latex example
Note: removing empty section \note in file 'johnson.all.pairs.sp.Rd'
johnson.all.pairs.sp text html latex example
Note: removing empty section \seealso in file 'kCliques.Rd'
kCliques text html latex example
Note: removing empty section \seealso in file 'kCores.Rd'
kCores text html latex example
Note: removing empty section \value in file 'kolmogorovMaxFlow.Rd'
Note: removing empty section \details in file 'kolmogorovMaxFlow.Rd'
Note: removing empty section \examples in file 'kolmogorovMaxFlow.Rd'
kolmogorovMaxFlow text html latex
Note: removing empty section \seealso in file 'lambdaSets.Rd'
lambdaSets text html latex example
layout text html latex example
Note: removing empty section \value in file 'lengauerTarjanDominatorTree.Rd'
Note: removing empty section \details in file 'lengauerTarjanDominatorTree.Rd'
Note: removing empty section \examples in file 'lengauerTarjanDominatorTree.Rd'
lengauerTarjanDominatorTree text html latex
Note: removing empty section \value in file 'makeBiconnectedPlanar.Rd'
Note: removing empty section \details in file 'makeBiconnectedPlanar.Rd'
Note: removing empty section \examples in file 'makeBiconnectedPlanar.Rd'
makeBiconnectedPlanar text html latex
Note: removing empty section \value in file 'makeConnected.Rd'
Note: removing empty section \details in file 'makeConnected.Rd'
Note: removing empty section \examples in file 'makeConnected.Rd'
makeConnected text html latex
Note: removing empty section \value in file 'makeMaximalPlanar.Rd'
Note: removing empty section \details in file 'makeMaximalPlanar.Rd'
Note: removing empty section \examples in file 'makeMaximalPlanar.Rd'
makeMaximalPlanar text html latex
Note: removing empty section \seealso in file 'maxClique.Rd'
maxClique text html latex example
maxFlow text html latex example
Note: removing empty section \value in file 'maximumCycleRatio.Rd'
Note: removing empty section \details in file 'maximumCycleRatio.Rd'
Note: removing empty section \examples in file 'maximumCycleRatio.Rd'
maximumCycleRatio text html latex
minCut text html latex example
Note: removing empty section \value in file 'minimumCycleRatio.Rd'
Note: removing empty section \details in file 'minimumCycleRatio.Rd'
Note: removing empty section \examples in file 'minimumCycleRatio.Rd'
minimumCycleRatio text html latex
mstree.kruskal text html latex example
mstree.prim text html latex example
Note: removing empty section \seealso in file 'ordering.Rd'
ordering text html latex example
Note: removing empty section \value in file 'planarCanonicalOrdering.Rd'
Note: removing empty section \details in file 'planarCanonicalOrdering.Rd'
Note: removing empty section \examples in file 'planarCanonicalOrdering.Rd'
planarCanonicalOrdering text html latex
Note: removing empty section \value in file 'planarFaceTraversal.Rd'
Note: removing empty section \details in file 'planarFaceTraversal.Rd'
Note: removing empty section \examples in file 'planarFaceTraversal.Rd'
planarFaceTraversal text html latex
Note: removing empty section \seealso in file 'removeSelfLoops.Rd'
removeSelfLoops text html latex example
separates text html latex example
Note: removing empty section \value in file 'sloanStartEndVertices.Rd'
Note: removing empty section \details in file 'sloanStartEndVertices.Rd'
Note: removing empty section \examples in file 'sloanStartEndVertices.Rd'
sloanStartEndVertices text html latex
sp.between text html latex example
strongComp text html latex example
Note: removing empty section \seealso in file 'transClosure.Rd'
transClosure text html latex example
transitivity text html latex example
tsort text html latex example
wavefront text html latex example
** building package indices ...
* DONE (RBGL)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: grid
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
*** caught bus error ***
address 0x0, cause 'non-existent physical address'
aborting ...