Rdisop 1.4.0
Steffen Neumann
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/Rdisop | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Tiger (10.4.11) / i386 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | N O T S U P P O R T E D |
* Installing *source* package 'Rdisop' ...
Using auto-selected zip options ''
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"e:\biocbld\bbs-2.4-bioc\R/include" -I"e:\biocbld\bbs-2.4-bioc\R/src/include" -Wall -O2
ar r libRcpp.a Rcpp.o
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
cp src/winlibs/libims*.dll R_PACKAGE_DIR:E:/biocbld/bbs-2.4-bioc/meat/Rdisop.buildbin-libdir/Rdisop/libs/
-rw-r--r-- 1 biocbuild None 2806048 Apr 20 2009 src/winlibs/libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Apr 20 2009 src/winlibs/libims.dll
libs in instal directory...
total 5488
-rw-r--r-- 1 biocbuild None 2806048 Oct 20 19:12 libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Oct 20 19:12 libims.dll
** libs
making DLL ...
g++ -I"E:/biocbld/bbs-2.4-bioc/R/include" -I./imslib/src -I../RcppSrc/ -O2 -Wall -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:122: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:207: warning: comparison between signed and unsigned integer expressions
disop.cpp:210: warning: comparison between signed and unsigned integer expressions
disop.cpp:218: warning: comparison between signed and unsigned integer expressions
disop.cpp:218: warning: comparison between signed and unsigned integer expressions
disop.cpp:171: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'SEXPREC* calculateScore(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:353: warning: comparison between signed and unsigned integer expressions
disop.cpp:353: warning: comparison between signed and unsigned integer expressions
disop.cpp:370: warning: comparison between signed and unsigned integer expressions
disop.cpp:373: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp:377: warning: comparison between signed and unsigned integer expressions
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&)':
disop.cpp:789: warning: deprecated conversion from string constant to 'char*'
disop.cpp:791: warning: deprecated conversion from string constant to 'char*'
disop.cpp:793: warning: deprecated conversion from string constant to 'char*'
disop.cpp:795: warning: deprecated conversion from string constant to 'char*'
disop.cpp:796: warning: deprecated conversion from string constant to 'char*'
disop.cpp:797: warning: deprecated conversion from string constant to 'char*'
g++ -shared -s -o Rdisop.dll tmp.def disop.o -L./winlibs -lims -L../RcppSrc/ -lRcpp -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
Info: resolving ims::IsotopeDistribution::SIZE by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-importc:/rtools/mingw/bin/../lib/gcc/mingw32/4.2.1-sjlj/../../../../mingw32/bin/ld.exe: warning: auto-importing has been activated without --enable-auto-import specified on the command line.
This should work unless it involves constant data structures referencing symbols from auto-imported DLLs.)
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'Rdisop'
Formats: text html latex example chm
RcppVersion text html latex example chm
addMolecules text html latex example chm
decomposeMass text html latex example chm
getMolecule text html latex example chm
initializeCHNOPS text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpRrPSmF\R.INSTALL678418be\Rdisop\chm\Rdisop.chm
Compile time: 0 minutes, 0 seconds
6 Topics
25 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpRrPSmF\R.INSTALL678418be\Rdisop\chm\Rdisop.chm, 21,307 bytes
Compression decreased file by 2,332 bytes.
** building package indices ...
** MD5 sums
packaged installation of 'Rdisop' as Rdisop_1.4.0.zip
* DONE (Rdisop)