Package: RefPlus

Version: 1.14.0

Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD build RefPlus

StartedAt: 2009-10-20 15:46:29 -0700 (Tue, 20 Oct 2009)

EndedAt: 2009-10-20 15:47:49 -0700 (Tue, 20 Oct 2009)

EllapsedTime: 80.3 seconds

RetCode: 0

Status: OK

PackageFile: RefPlus_1.14.0.tar.gz

PackageFileSize: 1.317 MiB

* checking for file 'RefPlus/DESCRIPTION' ... OK
* preparing 'RefPlus':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package ‘RefPlus’ ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: gcrma
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 duplicated,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rank,
	 rbind,
	 rep.int,
	 sapply,
	 sort,
	 table,
	 unique 

Loading required package: preprocessCore

Attaching package: 'affyPLM'


	The following object(s) are masked from package:stats :

	 resid,
	 residuals,
	 weights 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'RefPlus'
     Formats: text html latex example 
  RefPlus-package                   text    html    latex   example
Note: removing empty section \references in file 'colMedians.Rd'
  colMedians                        text    html    latex   example
  normalize.quantiles2              text    html    latex   example
  rma.para                          text    html    latex   example
  rmaplus                           text    html    latex   example
Note: removing empty section \examples in file 'rmaref.predict.Rd'
  rmaref.predict                    text    html    latex
** building package indices ...
* DONE (RefPlus)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'RefPlus_1.14.0.tar.gz'