Rgraphviz 1.22.2
Kasper Hansen
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/Rgraphviz | | Last Changed Rev: 42338 / Revision: 42512 | | Last Changed Date: 2009-10-12 19:10:16 -0700 (Mon, 12 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/Rgraphviz.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* this is package 'Rgraphviz' version '1.22.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rgraphviz' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'Rgraphviz' ...
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=C:\/Graphviz2.20
GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=20
GRAPHVIZ_INSTALL_SUBMINOR=3
Using the following compilation and linking flags for Rgraphviz
PKG_CPPFLAGS=-IC:\/Graphviz2.20/include/graphviz
PKG_LIBS=-LC:\/Graphviz2.20/bin -lgvc-4 -lgraph-4 -lcdt-4
GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
Created file src/Makevars.win
Created file R/graphviz_build_version.R
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c LL_funcs.c -o LL_funcs.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c Rgraphviz.c -o Rgraphviz.o
Rgraphviz.c:18: warning: C99 inline functions are not supported; using GNU89
Rgraphviz.c:18: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c RgraphvizInit.c -o RgraphvizInit.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c agopen.c -o agopen.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c agread.c -o agread.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c agwrite.c -o agwrite.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c bezier.c -o bezier.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c buildEdgeList.c -o buildEdgeList.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c buildNodeList.c -o buildNodeList.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c doLayout.c -o doLayout.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c graphvizVersion.c -o graphvizVersion.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -IC:/Graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32 -O3 -Wall -std=gnu99 -c init.c -o init.o
gcc -shared -s -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -LC:/Graphviz2.20/bin -lgvc-4 -lgraph-4 -lcdt-4 -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
Creating a new generic function for "head" in "Rgraphviz"
Creating a new generic function for "tail" in "Rgraphviz"
Creating a new generic function for "lines" in "Rgraphviz"
Creating a new generic function for "plot" in "Rgraphviz"
** help
*** installing help indices
>>> Building/Updating help pages for package 'Rgraphviz'
Formats: text html latex example chm
AgEdge-class text html latex example chm
AgNode-class text html latex example chm
AgTextLabel-class text html latex example chm
BezierCurve-class text html latex example chm
GraphvizAttributes text html latex chm
GraphvizLayouts text html latex example chm
Ragraph-class text html latex example chm
agopen text html latex example chm
agopenSimple text html latex example chm
agwrite text html latex example chm
boundingBox-class text html latex example chm
buildNodeList text html latex example chm
clusterData-methods text html latex example chm
getDefaultAttrs text html latex example chm
graphData-methods text html latex chm
graphDataDefaults-methods text html latex chm
graphLayout text html latex example chm
graphvizVersion text html latex example chm
layoutGraph text html latex example chm
makeNodeAttrs text html latex example chm
pEdge-class text html latex example chm
pNode-class text html latex example chm
pieGlyph text html latex example chm
plot-methods text html latex example chm
removedEdges text html latex example chm
renderGraph text html latex example chm
toDot-methods text html latex example chm
toFile text html latex example chm
xyPoint-class text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\RGRAPH~1.RCH\00_PKG~1\RGRAPH~1\chm\Rgraphviz.chm
Compile time: 0 minutes, 1 second
30 Topics
289 Local links
5 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\RGRAPH~1.RCH\00_PKG~1\RGRAPH~1\chm\Rgraphviz.chm, 83,680 bytes
Compression decreased file by 122,241 bytes.
** building package indices ...
** MD5 sums
* DONE (Rgraphviz)