SLGI 1.4.0
Nolwenn Le Meur
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/SLGI | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/SLGI.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SLGI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RpsiXML
Loading required package: annotate
Loading required package: graph
Loading required package: RBGL
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: addNode
Loading required package: apComplex
Creating a new generic function for "plot" in "SLGI"
** help
*** installing help indices
>>> Building/Updating help pages for package 'SLGI'
Formats: text html latex example chm
Atong text html latex example chm
AtongFnDomain text html latex example chm
AtongPair text html latex example chm
Boeke text html latex chm
SDL text html latex example chm
SGA text html latex example chm
SGD.SL text html latex example chm
TFmat text html latex example chm
byComplex text html latex example chm
comemberIn text html latex example chm
compare text html latex example chm
congruence text html latex example chm
createSquareMatrix text html latex example chm
dSLAM.GPL1444 text html latex chm
domainDist text html latex example chm
essglist text html latex example chm
getFASTAname text html latex example chm
getInteraction text html latex example chm
getSharedDomains text html latex example chm
getSharedInteraction text html latex example chm
getTestedPairs text html latex example chm
getUniquePairs text html latex example chm
gi2005 text html latex example chm
gi2007 text html latex example chm
gi2Interactome text html latex example chm
hyperG text html latex example chm
iSummary text html latex example chm
modelSLGI text html latex example chm
normInteraction text html latex example chm
plot text html latex example chm
seqMatcherAlign text html latex example chm
sharedBy text html latex example chm
sharedInt text html latex example chm
siResult-class text html latex example chm
test2Interact text html latex example chm
topInteraction text html latex example chm
twoWayTable text html latex example chm
withinComplex text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\SLGI~1.RCH\00_PKG~1\SLGI\chm\SLGI.chm
Compile time: 0 minutes, 0 seconds
39 Topics
115 Local links
8 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\SLGI~1.RCH\00_PKG~1\SLGI\chm\SLGI.chm, 58,821 bytes
Compression decreased file by 58,531 bytes.
** building package indices ...
** MD5 sums
* DONE (SLGI)