ScISI 1.16.0
Tony Chiang
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/ScISI | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/ScISI.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ScISI/DESCRIPTION' ... OK
* this is package 'ScISI' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ScISI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
checkComplex: no visible binding for global variable 'ScISI'
getAPMSData: no visible binding for global variable 'yNameTAP'
getAPMSData: no visible binding for global variable 'MBMEcHMSPCI'
getAPMSData: no visible binding for global variable 'MBMEcKrogan'
getGOInfo: no visible binding for global variable 'xtraGO'
getGOInfo: no visible binding for global variable 'unwanted'
getMipsInfo: no visible binding for global variable 'nonGenes'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'ScISI' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: annotate
Loading required package: graph
Loading required package: RBGL
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: addNode
** help
*** installing help indices
>>> Building/Updating help pages for package 'ScISI'
Formats: text html latex example chm
Desc-methods text html latex chm
ID-methods text html latex chm
JaccardCoef text html latex example chm
ScISI text html latex example chm
ScISI2html text html latex example chm
arp23 text html latex example chm
arp23G text html latex example chm
Note: removing empty section \details in file 'arp23Orf.Rd'
Note: removing empty section \details in file 'arp23Orf.Rd'
arp23Orf text html latex example chm
arp23Y2HG text html latex example chm
Note: removing empty section \references in file 'calcGraphStats.Rd'
Note: removing empty section \examples in file 'calcGraphStats.Rd'
Note: removing empty section \references in file 'calcGraphStats.Rd'
Note: removing empty section \examples in file 'calcGraphStats.Rd'
calcGraphStats text html latex chm
cfia text html latex example chm
cfiaOrf text html latex example chm
Note: removing empty section \examples in file 'checkComplex.Rd'
Note: removing empty section \examples in file 'checkComplex.Rd'
checkComplex text html latex chm
Note: removing empty section \note in file 'checkSGN.Rd'
Note: removing empty section \examples in file 'checkSGN.Rd'
Note: removing empty section \note in file 'checkSGN.Rd'
Note: removing empty section \examples in file 'checkSGN.Rd'
checkSGN text html latex chm
Note: removing empty section \examples in file 'compBijection.Rd'
Note: removing empty section \examples in file 'compBijection.Rd'
compBijection text html latex chm
Note: removing empty section \examples in file 'compareComplex.Rd'
Note: removing empty section \examples in file 'compareComplex.Rd'
compareComplex text html latex chm
createGODataFrame text html latex example chm
createGOMatrix text html latex example chm
Note: removing empty section \examples in file 'createMipsDataFrame.Rd'
Note: removing empty section \examples in file 'createMipsDataFrame.Rd'
createMipsDataFrame text html latex chm
createMipsMatrix text html latex example chm
createYeastDataObj text html latex example chm
dataS text html latex example chm
eAt text html latex example chm
eAt2 text html latex example chm
Note: removing empty section \details in file 'edgeProp.Rd'
Note: removing empty section \examples in file 'edgeProp.Rd'
Note: removing empty section \details in file 'edgeProp.Rd'
Note: removing empty section \examples in file 'edgeProp.Rd'
edgeProp text html latex chm
egEBI16112 text html latex example chm
expStats text html latex example chm
findSubComp text html latex example chm
gavin2mergeMG text html latex example chm
getAPMSData text html latex example chm
getGOInfo text html latex example chm
Note: removing empty section \examples in file 'getLocOrfs.Rd'
Note: removing empty section \examples in file 'getLocOrfs.Rd'
getLocOrfs text html latex chm
getMipsInfo text html latex example chm
getURL-methods text html latex chm
Note: removing empty section \details in file 'graphSumStats.Rd'
Note: removing empty section \examples in file 'graphSumStats.Rd'
Note: removing empty section \details in file 'graphSumStats.Rd'
Note: removing empty section \examples in file 'graphSumStats.Rd'
graphSumStats text html latex chm
ho2mergeMGG text html latex example chm
krogan2mergeMGGH text html latex example chm
locScISI text html latex example chm
mapping2SysG text html latex example chm
mappingsG text html latex example chm
maximizeSimilarity text html latex example chm
Note: removing empty section \details in file 'meanDeg.Rd'
Note: removing empty section \examples in file 'meanDeg.Rd'
Note: removing empty section \details in file 'meanDeg.Rd'
Note: removing empty section \examples in file 'meanDeg.Rd'
meanDeg text html latex chm
mergeBGMat text html latex example chm
mips2go text html latex example chm
nAt text html latex chm
nAtMap text html latex example chm
nonGenes text html latex example chm
nucComp text html latex example chm
recCompSize text html latex example chm
redundantM text html latex example chm
Note: removing empty section \examples in file 'rmByEvi.Rd'
Note: removing empty section \examples in file 'rmByEvi.Rd'
rmByEvi text html latex chm
runAlignment text html latex example chm
Note: removing empty section \details in file 'runCompareComplex.Rd'
Note: removing empty section \details in file 'runCompareComplex.Rd'
runCompareComplex text html latex example chm
Note: removing empty section \details in file 'subCompM.Rd'
Note: removing empty section \details in file 'subCompM.Rd'
subCompM text html latex example chm
Note: removing empty section \details in file 'sumStats.Rd'
Note: removing empty section \details in file 'sumStats.Rd'
sumStats text html latex example chm
unWantedComp text html latex example chm
unwanted text html latex example chm
xtraGO text html latex example chm
Note: removing empty section \examples in file 'xtraGONodes.Rd'
Note: removing empty section \examples in file 'xtraGONodes.Rd'
xtraGONodes text html latex chm
yeastData-class text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\SCISI~1.RCH\00_PKG~1\ScISI\chm\ScISI.chm
Compile time: 0 minutes, 0 seconds
61 Topics
148 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\SCISI~1.RCH\00_PKG~1\ScISI\chm\ScISI.chm, 72,146 bytes
Compression decreased file by 87,295 bytes.
** building package indices ...
** MD5 sums
* DONE (ScISI)