affycoretools 1.16.3
James W. MacDonald
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/affycoretools | | Last Changed Rev: 40559 / Revision: 42512 | | Last Changed Date: 2009-07-08 08:17:32 -0700 (Wed, 08 Jul 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ WARNINGS ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/affycoretools.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affycoretools/DESCRIPTION' ... OK
* this is package 'affycoretools' version '1.16.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affycoretools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
cv filterfun genefilter kOverA pOverA
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
/loc/home/biocbuild/bbs-2.4-bioc/meat/affycoretools.Rcheck/00check.log
for details
* Installing *source* package 'affycoretools' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: DBI
** help
*** installing help indices
>>> Building/Updating help pages for package 'affycoretools'
Formats: text html latex example
affystart text html latex
annBM text html latex example
convert.back text html latex
extractStats text html latex
foldFilt text html latex
foldFiltBM text html latex
getCols text html latex
getIndex text html latex
getOrder text html latex
getUniqueLL text html latex
getans text html latex
houtSig text html latex
hyperG2annaffy text html latex
hyperGoutput text html latex
intNames text html latex
limma2annaffy text html latex
limma2biomaRt text html latex
make.cl text html latex
makeFCList text html latex
makeIndices text html latex
pca.legend text html latex
plotDeg text html latex example
plotMA text html latex
plotPCA text html latex example
probes2table text html latex
probes2tableBM text html latex
tableFilt text html latex
vennCounts2 text html latex example
vennSelect text html latex
vennSelectBM text html latex
vennSelectFC text html latex
** building package indices ...
* DONE (affycoretools)