affyio 1.12.0
Benjamin Milo Bolstad
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/affyio | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* Installing *source* package 'affyio' ...
Using auto-selected zip options ''
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WARNING: this package has a configure script
It probably needs manual configuration
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** libs
making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c fread_functions.c -o fread_functions.o
fread_functions.c:301: warning: 'swap_uint_32' defined but not used
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c read_abatch.c -o read_abatch.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c read_bpmap.c -o read_bpmap.o
read_bpmap.c: In function 'ReadBPMAPHeader':
read_bpmap.c:78: warning: unused variable 'version_number_int'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c read_cdf_xda.c -o read_cdf_xda.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c read_cdffile2.c -o read_cdffile2.o
read_cdffile2.c:364: warning: 'token_ends_with' defined but not used
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c read_celfile_generic.c -o read_celfile_generic.o
read_celfile_generic.c: In function 'read_genericcel_file_intensities':
read_celfile_generic.c:697: warning: unused variable 'fread_err'
read_celfile_generic.c:695: warning: unused variable 'cur_index'
read_celfile_generic.c:694: warning: unused variable 'j'
read_celfile_generic.c: In function 'read_genericcel_file_stddev':
read_celfile_generic.c:747: warning: unused variable 'fread_err'
read_celfile_generic.c:745: warning: unused variable 'cur_index'
read_celfile_generic.c:744: warning: unused variable 'j'
read_celfile_generic.c: In function 'read_genericcel_file_npixels':
read_celfile_generic.c:801: warning: unused variable 'fread_err'
read_celfile_generic.c:799: warning: unused variable 'cur_index'
read_celfile_generic.c:798: warning: unused variable 'j'
read_celfile_generic.c: In function 'generic_get_masks_outliers':
read_celfile_generic.c:863: warning: unused variable 'fread_err'
read_celfile_generic.c:861: warning: unused variable 'cur_index'
read_celfile_generic.c:860: warning: unused variable 'j'
read_celfile_generic.c: In function 'generic_apply_masks':
read_celfile_generic.c:955: warning: unused variable 'fread_err'
read_celfile_generic.c:949: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_intensities':
read_celfile_generic.c:1689: warning: unused variable 'fread_err'
read_celfile_generic.c:1687: warning: unused variable 'cur_index'
read_celfile_generic.c:1686: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_stddev':
read_celfile_generic.c:1740: warning: unused variable 'fread_err'
read_celfile_generic.c:1738: warning: unused variable 'cur_index'
read_celfile_generic.c:1737: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_npixels':
read_celfile_generic.c:1794: warning: unused variable 'fread_err'
read_celfile_generic.c:1792: warning: unused variable 'cur_index'
read_celfile_generic.c:1791: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzgeneric_get_masks_outliers':
read_celfile_generic.c:1859: warning: unused variable 'fread_err'
read_celfile_generic.c:1857: warning: unused variable 'cur_index'
read_celfile_generic.c:1856: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzgeneric_apply_masks':
read_celfile_generic.c:1951: warning: unused variable 'fread_err'
read_celfile_generic.c:1945: warning: unused variable 'j'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c read_clf.c -o read_clf.o
read_clf.c: In function 'read_clf_header':
read_clf.c:557: warning: unused variable 'i'
read_clf.c: At top level:
read_clf.c:292: warning: 'token_ends_with' defined but not used
read_clf.c:389: warning: 'IsCommentLine' defined but not used
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c read_generic.c -o read_generic.o
read_generic.c: In function 'determine_MIMETYPE':
read_generic.c:399: warning: control reaches end of non-void function
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c read_pgf.c -o read_pgf.o
read_pgf.c: In function 'read_pgf_header':
read_pgf.c:901: warning: unused variable 'i'
read_pgf.c: In function 'insert_level0':
read_pgf.c:1167: warning: unused variable 'temp_ptr'
read_pgf.c: In function 'pgf_count_probeset_types':
read_pgf.c:1265: warning: assignment from incompatible pointer type
read_pgf.c: At top level:
read_pgf.c:363: warning: 'token_ends_with' defined but not used
gcc -shared -s -o affyio.dll tmp.def fread_functions.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_pgf.o -lRzlib -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'affyio'
Formats: text html latex example chm
check.cdf.type text html latex chm
read.cdffile.list text html latex chm
read.celfile text html latex chm
read.celfile.header text html latex chm
read.celfile.probeintensity.matri text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\Rtmp14MXuv\R.INSTALL678418be\affyio\chm\affyio.chm
Compile time: 0 minutes, 0 seconds
6 Topics
11 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\tmpdir\Rtmp14MXuv\R.INSTALL678418be\affyio\chm\affyio.chm, 19,629 bytes
Compression increased file by 1,978 bytes.
** building package indices ...
** MD5 sums
packaged installation of 'affyio' as affyio_1.12.0.zip
* DONE (affyio)