arrayQualityMetrics 2.2.3
Audrey Kauffmann
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/arrayQualityMetrics | | Last Changed Rev: 42106 / Revision: 42512 | | Last Changed Date: 2009-10-01 07:30:44 -0700 (Thu, 01 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/arrayQualityMetrics.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* this is package 'arrayQualityMetrics' version '2.2.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQualityMetrics' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
aqm.probesmap: no visible binding for global variable ‘ProbesMap’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package ‘arrayQualityMetrics’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: gcrma
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
Loading required package: preprocessCore
Attaching package: 'affyPLM'
The following object(s) are masked from package:stats :
resid,
residuals,
weights
** help
*** installing help indices
>>> Building/Updating help pages for package 'arrayQualityMetrics'
Formats: text html latex example
XYfromGAL text html latex
aqm.boxplot text html latex
aqm.density text html latex
aqm.heatmap text html latex
aqm.maplot text html latex
aqm.meansd text html latex
aqm.nuse text html latex
aqm.pca text html latex
aqm.plot text html latex
aqm.pmmm text html latex example
aqm.prepaffy text html latex example
aqm.prepdata text html latex example
aqm.probesmap text html latex
aqm.qcstats text html latex example
aqm.rle text html latex
aqm.rnadeg text html latex
aqm.spatial text html latex
aqm.spatialbg text html latex
aqm.writereport text html latex example
aqmobj.box text html latex
aqmobj.dens text html latex
aqmobj.heat text html latex
aqmobj.ma text html latex
aqmobj.msd text html latex
aqmobj.nuse text html latex
aqmobj.pca text html latex
aqmobj.pmmm text html latex
aqmobj.prepaffy text html latex
aqmobj.prepdata text html latex
aqmobj.probesmap text html latex
aqmobj.qcs text html latex
aqmobj.rle text html latex
aqmobj.rnadeg text html latex
aqmobj.spatial text html latex
aqmobj.spatialbg text html latex
arrayQualityMetrics text html latex
** building package indices ...
* DONE (arrayQualityMetrics)