bgx 1.8.0
Ernest Turro
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/bgx | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/bgx.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bgx/DESCRIPTION' ... OK
* this is package 'bgx' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'bgx' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'bgx' ...
** libs
making DLL ...
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -I ../boostIncl -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c bgx.cc -o bgx.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -I ../boostIncl -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c bgx_frontend.cc -o bgx_frontend.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -I ../boostIncl -DUSING_R -march=i486 -ffast-math -O3 -std=c99 -O3 -Wall -std=gnu99 -c qnorm.c -o qnorm.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -I ../boostIncl -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c rundir.cc -o rundir.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -I ../boostIncl -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c sokal.cc -o sokal.o
g++ -shared -s -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
** help
*** installing help indices
>>> Building/Updating help pages for package 'bgx'
Formats: text html latex example chm
Note: removing empty section \examples in file 'analysis.bgx.Rd'
Note: removing empty section \examples in file 'analysis.bgx.Rd'
analysis.bgx text html latex chm
bgx text html latex example chm
Note: removing empty section \examples in file 'mcmc.bgx.Rd'
Note: removing empty section \examples in file 'mcmc.bgx.Rd'
mcmc.bgx text html latex chm
Note: removing empty section \examples in file 'readOutput.bgx.Rd'
Note: removing empty section \examples in file 'readOutput.bgx.Rd'
readOutput.bgx text html latex chm
Note: removing empty section \value in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \details in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \examples in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \value in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \details in file 'saveAffinityPlot.bgx.Rd'
Note: removing empty section \examples in file 'saveAffinityPlot.bgx.Rd'
saveAffinityPlot.bgx text html latex chm
Note: removing empty section \details in file 'setupVars.bgx.Rd'
Note: removing empty section \examples in file 'setupVars.bgx.Rd'
Note: removing empty section \details in file 'setupVars.bgx.Rd'
Note: removing empty section \examples in file 'setupVars.bgx.Rd'
setupVars.bgx text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\BGX~1.RCH\00_PKG~1\bgx\chm\bgx.chm
Compile time: 0 minutes, 1 second
7 Topics
35 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\BGX~1.RCH\00_PKG~1\bgx\chm\bgx.chm, 27,330 bytes
Compression decreased file by 4,031 bytes.
** building package indices ...
** MD5 sums
* DONE (bgx)