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Package 50/319HostnameOS / ArchBUILDCHECKBUILD BIN
bridge 1.8.0
Raphael Gottardo
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/bridge
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
Package: bridge
Version: 1.8.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh bridge_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R bridge.buildbin-libdir
StartedAt: 2009-10-20 19:18:57 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:19:10 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 13.1 seconds
RetCode: 0
Status: OK
PackageFile: bridge_1.8.0.tgz
PackageFileSize: 549.1 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=bridge.buildbin-libdir bridge_1.8.0.tar.gz'

* Installing *source* package ‘bridge’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function ‘gene_express_2s’:
bridge2.affy.c:37: warning: unused variable ‘count_model’
bridge2.affy.c:36: warning: unused variable ‘old_model’
bridge2.affy.c: In function ‘up_date_w2’:
bridge2.affy.c:302: warning: implicit declaration of function ‘dirichlet’
bridge2.affy.c:282: warning: unused variable ‘w_new’
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2.c -o bridge2.o
bridge2.c: In function ‘mcmc’:
bridge2.c:199: warning: unused variable ‘width_a’
bridge2.c:199: warning: unused variable ‘old_a’
bridge2.c:198: warning: unused variable ‘width_b’
bridge2.c:198: warning: unused variable ‘old_b’
bridge2.c:192: warning: unused variable ‘sum_res2’
bridge2.c:191: warning: unused variable ‘sum_res1’
bridge2.c:177: warning: unused variable ‘countp’
bridge2.c:175: warning: unused variable ‘countb_eps’
bridge2.c:174: warning: unused variable ‘counta_eps’
bridge2.c:173: warning: unused variable ‘counta’
bridge2.c:171: warning: unused variable ‘countrho’
bridge2.c:166: warning: unused variable ‘b_eps_new’
bridge2.c:166: warning: unused variable ‘a_eps_new’
bridge2.c:165: warning: unused variable ‘l_ab_new’
bridge2.c:165: warning: unused variable ‘l_ab’
bridge2.c:163: warning: unused variable ‘post_prec_eta’
bridge2.c:163: warning: unused variable ‘post_mean_eta’
bridge2.c:162: warning: unused variable ‘post_prec_delta’
bridge2.c:162: warning: unused variable ‘post_mean_delta’
bridge2.c:161: warning: unused variable ‘post_prec_alpha’
bridge2.c:161: warning: unused variable ‘post_mean_alpha’
bridge2.c:160: warning: unused variable ‘post_prec_beta’
bridge2.c:160: warning: unused variable ‘post_mean_beta’
bridge2.c:159: warning: unused variable ‘post_prec_mu’
bridge2.c:159: warning: unused variable ‘post_mean_mu’
bridge2.c:154: warning: unused variable ‘dens_t_new’
bridge2.c:154: warning: unused variable ‘dens_t’
bridge2.c:145: warning: unused variable ‘pi’
bridge2.c:143: warning: unused variable ‘dens_rho_new’
bridge2.c:143: warning: unused variable ‘dens_rho’
bridge2.c:142: warning: unused variable ‘sum_rho_new’
bridge2.c:142: warning: unused variable ‘sum_rho’
bridge2.c:138: warning: unused variable ‘rho_new’
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function ‘qr_solve’:
bridge2_util.c:570: warning: implicit declaration of function ‘dqrdc2_’
bridge2_util.c:585: warning: implicit declaration of function ‘dqrcf_’
bridge2_util.c:549: warning: unused variable ‘vmax’
bridge2_util.c: In function ‘inverse’:
bridge2_util.c:608: warning: unused variable ‘j’
bridge2_util.c: In function ‘product_mat_vec’:
bridge2_util.c:655: warning: unused variable ‘k’
bridge2_util.c: In function ‘slice_sampling_b’:
bridge2_util.c:763: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:771: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_a’:
bridge2_util.c:818: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:826: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_rho’:
bridge2_util.c:875: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:884: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_p’:
bridge2_util.c:961: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:969: warning: suggest parentheses around comparison in operand of &
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge3.c -o bridge3.o
bridge3.c: In function ‘gene_express_3s’:
bridge3.c:38: warning: unused variable ‘count_model’
bridge3.c:37: warning: unused variable ‘old_model’
bridge3.c: In function ‘gibbs_mu’:
bridge3.c:332: warning: suggest parentheses around comparison in operand of &
bridge3.c: In function ‘up_date_w’:
bridge3.c:362: warning: unused variable ‘w_new’
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function ‘gene_express_2s’:
bridge2.affy.c:37: warning: unused variable ‘count_model’
bridge2.affy.c:36: warning: unused variable ‘old_model’
bridge2.affy.c: In function ‘up_date_w2’:
bridge2.affy.c:302: warning: implicit declaration of function ‘dirichlet’
bridge2.affy.c:282: warning: unused variable ‘w_new’
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2.c -o bridge2.o
bridge2.c: In function ‘mcmc’:
bridge2.c:199: warning: unused variable ‘width_a’
bridge2.c:199: warning: unused variable ‘old_a’
bridge2.c:198: warning: unused variable ‘width_b’
bridge2.c:198: warning: unused variable ‘old_b’
bridge2.c:192: warning: unused variable ‘sum_res2’
bridge2.c:191: warning: unused variable ‘sum_res1’
bridge2.c:177: warning: unused variable ‘countp’
bridge2.c:175: warning: unused variable ‘countb_eps’
bridge2.c:174: warning: unused variable ‘counta_eps’
bridge2.c:173: warning: unused variable ‘counta’
bridge2.c:171: warning: unused variable ‘countrho’
bridge2.c:166: warning: unused variable ‘b_eps_new’
bridge2.c:166: warning: unused variable ‘a_eps_new’
bridge2.c:165: warning: unused variable ‘l_ab_new’
bridge2.c:165: warning: unused variable ‘l_ab’
bridge2.c:163: warning: unused variable ‘post_prec_eta’
bridge2.c:163: warning: unused variable ‘post_mean_eta’
bridge2.c:162: warning: unused variable ‘post_prec_delta’
bridge2.c:162: warning: unused variable ‘post_mean_delta’
bridge2.c:161: warning: unused variable ‘post_prec_alpha’
bridge2.c:161: warning: unused variable ‘post_mean_alpha’
bridge2.c:160: warning: unused variable ‘post_prec_beta’
bridge2.c:160: warning: unused variable ‘post_mean_beta’
bridge2.c:159: warning: unused variable ‘post_prec_mu’
bridge2.c:159: warning: unused variable ‘post_mean_mu’
bridge2.c:154: warning: unused variable ‘dens_t_new’
bridge2.c:154: warning: unused variable ‘dens_t’
bridge2.c:145: warning: unused variable ‘pi’
bridge2.c:143: warning: unused variable ‘dens_rho_new’
bridge2.c:143: warning: unused variable ‘dens_rho’
bridge2.c:142: warning: unused variable ‘sum_rho_new’
bridge2.c:142: warning: unused variable ‘sum_rho’
bridge2.c:138: warning: unused variable ‘rho_new’
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function ‘qr_solve’:
bridge2_util.c:570: warning: implicit declaration of function ‘dqrdc2_’
bridge2_util.c:585: warning: implicit declaration of function ‘dqrcf_’
bridge2_util.c:549: warning: unused variable ‘vmax’
bridge2_util.c: In function ‘inverse’:
bridge2_util.c:608: warning: unused variable ‘j’
bridge2_util.c: In function ‘product_mat_vec’:
bridge2_util.c:655: warning: unused variable ‘k’
bridge2_util.c: In function ‘slice_sampling_b’:
bridge2_util.c:763: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:771: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_a’:
bridge2_util.c:818: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:826: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_rho’:
bridge2_util.c:875: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:884: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_p’:
bridge2_util.c:961: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:969: warning: suggest parentheses around comparison in operand of &
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge3.c -o bridge3.o
bridge3.c: In function ‘gene_express_3s’:
bridge3.c:38: warning: unused variable ‘count_model’
bridge3.c:37: warning: unused variable ‘old_model’
bridge3.c: In function ‘gibbs_mu’:
bridge3.c:332: warning: suggest parentheses around comparison in operand of &
bridge3.c: In function ‘up_date_w’:
bridge3.c:362: warning: unused variable ‘w_new’
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function ‘gene_express_2s’:
bridge2.affy.c:37: warning: unused variable ‘count_model’
bridge2.affy.c:36: warning: unused variable ‘old_model’
bridge2.affy.c: In function ‘up_date_w2’:
bridge2.affy.c:302: warning: implicit declaration of function ‘dirichlet’
bridge2.affy.c:282: warning: unused variable ‘w_new’
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2.c -o bridge2.o
bridge2.c: In function ‘mcmc’:
bridge2.c:199: warning: unused variable ‘width_a’
bridge2.c:199: warning: unused variable ‘old_a’
bridge2.c:198: warning: unused variable ‘width_b’
bridge2.c:198: warning: unused variable ‘old_b’
bridge2.c:192: warning: unused variable ‘sum_res2’
bridge2.c:191: warning: unused variable ‘sum_res1’
bridge2.c:177: warning: unused variable ‘countp’
bridge2.c:175: warning: unused variable ‘countb_eps’
bridge2.c:174: warning: unused variable ‘counta_eps’
bridge2.c:173: warning: unused variable ‘counta’
bridge2.c:171: warning: unused variable ‘countrho’
bridge2.c:166: warning: unused variable ‘b_eps_new’
bridge2.c:166: warning: unused variable ‘a_eps_new’
bridge2.c:165: warning: unused variable ‘l_ab_new’
bridge2.c:165: warning: unused variable ‘l_ab’
bridge2.c:163: warning: unused variable ‘post_prec_eta’
bridge2.c:163: warning: unused variable ‘post_mean_eta’
bridge2.c:162: warning: unused variable ‘post_prec_delta’
bridge2.c:162: warning: unused variable ‘post_mean_delta’
bridge2.c:161: warning: unused variable ‘post_prec_alpha’
bridge2.c:161: warning: unused variable ‘post_mean_alpha’
bridge2.c:160: warning: unused variable ‘post_prec_beta’
bridge2.c:160: warning: unused variable ‘post_mean_beta’
bridge2.c:159: warning: unused variable ‘post_prec_mu’
bridge2.c:159: warning: unused variable ‘post_mean_mu’
bridge2.c:154: warning: unused variable ‘dens_t_new’
bridge2.c:154: warning: unused variable ‘dens_t’
bridge2.c:145: warning: unused variable ‘pi’
bridge2.c:143: warning: unused variable ‘dens_rho_new’
bridge2.c:143: warning: unused variable ‘dens_rho’
bridge2.c:142: warning: unused variable ‘sum_rho_new’
bridge2.c:142: warning: unused variable ‘sum_rho’
bridge2.c:138: warning: unused variable ‘rho_new’
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function ‘qr_solve’:
bridge2_util.c:570: warning: implicit declaration of function ‘dqrdc2_’
bridge2_util.c:585: warning: implicit declaration of function ‘dqrcf_’
bridge2_util.c:549: warning: unused variable ‘vmax’
bridge2_util.c: In function ‘inverse’:
bridge2_util.c:608: warning: unused variable ‘j’
bridge2_util.c: In function ‘product_mat_vec’:
bridge2_util.c:655: warning: unused variable ‘k’
bridge2_util.c: In function ‘slice_sampling_b’:
bridge2_util.c:763: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:771: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_a’:
bridge2_util.c:818: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:826: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_rho’:
bridge2_util.c:875: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:884: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_p’:
bridge2_util.c:961: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:969: warning: suggest parentheses around comparison in operand of &
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge3.c -o bridge3.o
bridge3.c: In function ‘gene_express_3s’:
bridge3.c:38: warning: unused variable ‘count_model’
bridge3.c:37: warning: unused variable ‘old_model’
bridge3.c: In function ‘gibbs_mu’:
bridge3.c:332: warning: suggest parentheses around comparison in operand of &
bridge3.c: In function ‘up_date_w’:
bridge3.c:362: warning: unused variable ‘w_new’
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function ‘gene_express_2s’:
bridge2.affy.c:37: warning: unused variable ‘count_model’
bridge2.affy.c:36: warning: unused variable ‘old_model’
bridge2.affy.c: In function ‘up_date_w2’:
bridge2.affy.c:302: warning: implicit declaration of function ‘dirichlet’
bridge2.affy.c:282: warning: unused variable ‘w_new’
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2.c -o bridge2.o
bridge2.c: In function ‘mcmc’:
bridge2.c:199: warning: unused variable ‘width_a’
bridge2.c:199: warning: unused variable ‘old_a’
bridge2.c:198: warning: unused variable ‘width_b’
bridge2.c:198: warning: unused variable ‘old_b’
bridge2.c:192: warning: unused variable ‘sum_res2’
bridge2.c:191: warning: unused variable ‘sum_res1’
bridge2.c:177: warning: unused variable ‘countp’
bridge2.c:175: warning: unused variable ‘countb_eps’
bridge2.c:174: warning: unused variable ‘counta_eps’
bridge2.c:173: warning: unused variable ‘counta’
bridge2.c:171: warning: unused variable ‘countrho’
bridge2.c:166: warning: unused variable ‘b_eps_new’
bridge2.c:166: warning: unused variable ‘a_eps_new’
bridge2.c:165: warning: unused variable ‘l_ab_new’
bridge2.c:165: warning: unused variable ‘l_ab’
bridge2.c:163: warning: unused variable ‘post_prec_eta’
bridge2.c:163: warning: unused variable ‘post_mean_eta’
bridge2.c:162: warning: unused variable ‘post_prec_delta’
bridge2.c:162: warning: unused variable ‘post_mean_delta’
bridge2.c:161: warning: unused variable ‘post_prec_alpha’
bridge2.c:161: warning: unused variable ‘post_mean_alpha’
bridge2.c:160: warning: unused variable ‘post_prec_beta’
bridge2.c:160: warning: unused variable ‘post_mean_beta’
bridge2.c:159: warning: unused variable ‘post_prec_mu’
bridge2.c:159: warning: unused variable ‘post_mean_mu’
bridge2.c:154: warning: unused variable ‘dens_t_new’
bridge2.c:154: warning: unused variable ‘dens_t’
bridge2.c:145: warning: unused variable ‘pi’
bridge2.c:143: warning: unused variable ‘dens_rho_new’
bridge2.c:143: warning: unused variable ‘dens_rho’
bridge2.c:142: warning: unused variable ‘sum_rho_new’
bridge2.c:142: warning: unused variable ‘sum_rho’
bridge2.c:138: warning: unused variable ‘rho_new’
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function ‘qr_solve’:
bridge2_util.c:570: warning: implicit declaration of function ‘dqrdc2_’
bridge2_util.c:585: warning: implicit declaration of function ‘dqrcf_’
bridge2_util.c:549: warning: unused variable ‘vmax’
bridge2_util.c: In function ‘inverse’:
bridge2_util.c:608: warning: unused variable ‘j’
bridge2_util.c: In function ‘product_mat_vec’:
bridge2_util.c:655: warning: unused variable ‘k’
bridge2_util.c: In function ‘slice_sampling_b’:
bridge2_util.c:763: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:771: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_a’:
bridge2_util.c:818: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:826: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_rho’:
bridge2_util.c:875: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:884: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function ‘slice_sampling_p’:
bridge2_util.c:961: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:969: warning: suggest parentheses around comparison in operand of &
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bridge3.c -o bridge3.o
bridge3.c: In function ‘gene_express_3s’:
bridge3.c:38: warning: unused variable ‘count_model’
bridge3.c:37: warning: unused variable ‘old_model’
bridge3.c: In function ‘gibbs_mu’:
bridge3.c:332: warning: suggest parentheses around comparison in operand of &
bridge3.c: In function ‘up_date_w’:
bridge3.c:362: warning: unused variable ‘w_new’
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'bridge'
     Formats: text html latex example 
  bridge.2samples                   text    html    latex   example
  bridge.3samples                   text    html    latex   example
  hiv                               text    html    latex
** building package indices ...
* DONE (bridge)