cellHTS2 2.8.3
Florian Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/cellHTS2 | | Last Changed Rev: 40951 / Revision: 42512 | | Last Changed Date: 2009-08-01 10:06:58 -0700 (Sat, 01 Aug 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/cellHTS2.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.8.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chanCorrFun: no visible binding for global variable 'nrChannel'
chanCorrFun: no visible binding for global variable 'maxRep'
chanCorrFun: no visible binding for global variable 'isTwoWay'
chanCorrFun: no visible binding for global variable 'pact'
chanCorrFun: no visible binding for global variable 'pinh'
chanCorrFun: no visible binding for global variable 'pneg'
chanCorrFun: no visible binding for global variable 'ppos'
chanCorrFun: no visible binding for global variable 'wellTypeColor'
chanCorrFun: no visible binding for global variable 'mt'
chanCorrFun: no visible binding for global variable 'finalWellAnno'
chanCorrFun: no visible binding for global variable 'iwells'
chanCorrFun: no visible binding for global variable 'whHasData'
chanCorrFun: no visible binding for global variable 'basePath'
chanCorrFun: no visible binding for global variable 'subPath'
chanCorrFun: no visible binding for global variable 'con'
chanCorrFun: no visible binding for global variable 'plsiz'
chanCorrFun : <anonymous>: no visible binding for global variable
'platedat'
chanCorrFun : <anonymous>: no visible binding for global variable
'wellTypeColor'
corrFun: no visible binding for global variable 'nrChannel'
corrFun: no visible binding for global variable 'nrRepCh'
corrFun: no visible binding for global variable 'qmsummary'
corrFun: no visible binding for global variable 'wellCount'
corrFun: no visible binding for global variable 'basePath'
corrFun: no visible binding for global variable 'subPath'
corrFun: no visible binding for global variable 'con'
corrFun: no visible binding for global variable 'plsiz'
corrFun : <anonymous>: no visible binding for global variable
'platedat'
corrFun : <anonymous>: no visible binding for global variable
'whHasData'
corrFun : <anonymous>: no visible binding for global variable
'wellTypeColor'
corrFun : <anonymous>: no visible binding for global variable 'mtt'
corrFun: no visible binding for global variable 'platedat'
corrFun: no visible binding for global variable 'whHasData'
histFun: no visible binding for global variable 'nrChannel'
histFun: no visible binding for global variable 'nrRepCh'
histFun: no visible binding for global variable 'maxRep'
histFun: no visible binding for global variable 'iwells'
histFun: no visible binding for global variable 'whHasData'
histFun: no visible binding for global variable 'basePath'
histFun: no visible binding for global variable 'subPath'
histFun: no visible binding for global variable 'con'
histFun: no visible binding for global variable 'plsiz'
histFun : <anonymous>: no visible binding for global variable
'platedat'
histFun : <anonymous>: no visible binding for global variable 'brks'
histFun : <anonymous>: no visible binding for global variable 'mtt'
histFun : <anonymous>: no visible binding for global variable
'wellTypeColor'
histFun: no visible binding for global variable 'qmsummary'
intensFun: no visible binding for global variable 'nrChannel'
intensFun: no visible binding for global variable 'platedat'
intensFun: no visible binding for global variable 'pneg'
intensFun: no visible binding for global variable 'isTwoWay'
intensFun: no visible binding for global variable 'pact'
intensFun: no visible binding for global variable 'pinh'
intensFun: no visible binding for global variable 'ppos'
intensFun: no visible binding for global variable 'maxRep'
intensFun: no visible binding for global variable 'whHasData'
intensFun: no visible binding for global variable 'basePath'
intensFun: no visible binding for global variable 'subPath'
intensFun: no visible binding for global variable 'con'
intensFun: no visible binding for global variable 'plsiz'
intensFun : <anonymous>: no visible binding for global variable
'platedat'
intensFun: no visible binding for global variable 'genAnno'
sdFun: no visible binding for global variable 'nrChannel'
sdFun: no visible binding for global variable 'platedat'
sdFun: no visible binding for global variable 'pneg'
sdFun: no visible binding for global variable 'isTwoWay'
sdFun: no visible binding for global variable 'pact'
sdFun: no visible binding for global variable 'pinh'
sdFun: no visible binding for global variable 'ppos'
sdFun: no visible binding for global variable 'qmsummary'
sdFun: no visible binding for global variable 'basePath'
sdFun: no visible binding for global variable 'subPath'
sdFun: no visible binding for global variable 'con'
sdFun: no visible binding for global variable 'plsiz'
sdFun: no visible binding for global variable 'genAnno'
Data<-,cellHTS-array: no visible global function definition for
'channelNames<-'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ...
Running 'test.R'
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
>>> Building/Updating help pages for package 'cellHTS2'
Formats: text html latex example
Bscore text html latex example
Data text html latex
ROC-class text html latex example
ROC text html latex example
annotate text html latex example
batch text html latex
bdgpbiomart text html latex example
cellHTS-class text html latex example
cellHTS2 text html latex
configurationAsScreenPlot text html latex example
configure text html latex example
convertOldCellHTS text html latex example
convertWellCoordinates text html latex example
data-KcViab text html latex example
data-KcViabSmall text html latex example
data-dualCh text html latex example
data-oldKcViabSmall text html latex example
getDynamicRange text html latex example
getEnVisionRawData text html latex example
getMeasureRepAgreement text html latex example
getTopTable text html latex example
getZfactor text html latex example
imageScreen text html latex example
intensityFiles text html latex
normalizePlates text html latex example
oneRowPerId text html latex example
plate text html latex
plateEffects text html latex
plotSpatialEffects text html latex example
readHTAnalystData text html latex example
readPlateList text html latex example
scoreReplicates text html latex example
scores2calls text html latex example
spatialNormalization text html latex example
state text html latex
summarizeChannels text html latex example
summarizeReplicates text html latex example
templateDescriptionFile text html latex example
updateCellHTS text html latex example
wellAnno text html latex
write.tabdel text html latex example
writeReport text html latex example
writeTab text html latex example
** building package indices ...
* DONE (cellHTS2)