cosmoGUI 1.10.0
Oliver Bembom
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/cosmoGUI | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/cosmoGUI.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cosmoGUI/DESCRIPTION' ... OK
* this is package 'cosmoGUI' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cosmoGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
advanced: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
advancedBuild: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for global variable
'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
mysample: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
sampleA: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
sampleICBound: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
sampleICStep: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
sampleV: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
subMotif: no visible binding for '<<-' assignment to
'COSMO.CONSTRAINTS'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* Installing *source* package 'cosmoGUI' ...
** R
** preparing package for lazy loading
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: DynDoc
Loading required package: tools
Loading required package: seqLogo
Loading required package: grid
Welcome to cosmo version 1.10.0
cosmo is free for research purposes only. For more details, type
license.cosmo(). Type citation('cosmo') for details on how to cite
cosmo in publications.
** help
*** installing help indices
>>> Building/Updating help pages for package 'cosmoGUI'
Formats: text html latex example
Note: removing empty section \seealso in file 'constraintBuilder.Rd'
constraintBuilder text html latex example
** building package indices ...
* DONE (cosmoGUI)