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Package 73/319HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.2.4
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/crlmm
Last Changed Rev: 40625 / Revision: 42512
Last Changed Date: 2009-07-14 17:21:23 -0700 (Tue, 14 Jul 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: crlmm
Version: 1.2.4
Command: /Users/biocbuild/BBS/utils/build-universal.sh crlmm_1.2.4.tar.gz /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R crlmm.buildbin-libdir
StartedAt: 2009-10-20 19:25:59 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:26:10 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 11.0 seconds
RetCode: 0
Status: OK
PackageFile: crlmm_1.2.4.tgz
PackageFileSize: 830.4 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=crlmm.buildbin-libdir crlmm_1.2.4.tar.gz'

* Installing *source* package ‘crlmm’ ...
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c gtypeCaller.c -o gtypeCaller.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c gtypeCallerNM.c -o gtypeCallerNM.o
gtypeCallerNM.c: In function ‘gtypeCallerPart1nm’:
gtypeCallerNM.c:212: warning: implicit declaration of function ‘mad_median’
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c gtypeCallerNormalNoN.c -o gtypeCallerNormalNoN.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c gtypeCallerTNoN.c -o gtypeCallerTNoN.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c init.c -o init.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c tmp.c -o tmp.o
tmp.c: In function ‘test’:
tmp.c:17: warning: implicit declaration of function ‘genotypeConfidence’
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c trimmed.c -o trimmed.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c utils.c -o utils.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o crlmm.so gtypeCaller.o gtypeCallerNM.o gtypeCallerNormalNoN.o gtypeCallerTNoN.o init.o tmp.o trimmed.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c gtypeCaller.c -o gtypeCaller.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c gtypeCallerNM.c -o gtypeCallerNM.o
gtypeCallerNM.c: In function ‘gtypeCallerPart1nm’:
gtypeCallerNM.c:212: warning: implicit declaration of function ‘mad_median’
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c gtypeCallerNormalNoN.c -o gtypeCallerNormalNoN.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c gtypeCallerTNoN.c -o gtypeCallerTNoN.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c init.c -o init.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c tmp.c -o tmp.o
tmp.c: In function ‘test’:
tmp.c:17: warning: implicit declaration of function ‘genotypeConfidence’
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c trimmed.c -o trimmed.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c utils.c -o utils.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o crlmm.so gtypeCaller.o gtypeCallerNM.o gtypeCallerNormalNoN.o gtypeCallerTNoN.o init.o tmp.o trimmed.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'crlmm'
     Formats: text html latex example 
  celDates                          text    html    latex
  cnrma                             text    html    latex   example
  computeCopynumber                 text    html    latex
  crlmm-package                     text    html    latex
  crlmm                             text    html    latex   example
  crlmmIllumina                     text    html    latex   example
  list.celfiles                     text    html    latex   example
  methods-SnpSet                    text    html    latex   example
  readIdatFiles                     text    html    latex   example
  snprma                            text    html    latex   example
** building package indices ...
* DONE (crlmm)