externalVector 1.10.0
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/externalVector | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/externalVector.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Arith,externalVectorWithStorage-missing: no visible binding for global
variable '.generic'
Complex,externalVectorWithStorage: no visible binding for global
variable 'x'
external.size,externalResource-gcAllocator: no visible binding for
global variable 'x'
Subset2,ANY-ANY-noneIndex: possible error in Subset(x, i, NULL): unused
argument(s) (NULL)
Subset2,ANY-noneIndex-ANY: possible error in Subset(x, NULL, j): unused
argument(s) (j)
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* Installing *source* package 'externalVector' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c allocator.c -o allocator.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c arraySummary.c -o arraySummary.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c groups.c -o groups.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c math.c -o math.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c slice.c -o slice.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c storage.c -o storage.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c subscript.c -o subscript.o
gcc -shared -s -o externalVector.dll tmp.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** preparing package for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Creating a new generic function for "colSums" in "externalVector"
Creating a new generic function for "colMeans" in "externalVector"
Creating a new generic function for "rowSums" in "externalVector"
Creating a new generic function for "rowMeans" in "externalVector"
Creating a new generic function for "apply" in "externalVector"
Creating a new generic function for "lapply" in "externalVector"
Creating a new generic function for "sapply" in "externalVector"
Creating a new generic function for "mean" in "externalVector"
Creating a new generic function for "median" in "externalVector"
Creating a generic for "var" in package "externalVector"
(the supplied definition differs from and overrides the implicit generic in package "stats": Formal arguments differ (in default values?))
Creating a generic for "cov" in package "externalVector"
(the supplied definition differs from and overrides the implicit generic in package "stats": Formal arguments differ (in default values?))
Creating a generic for "cor" in package "externalVector"
(the supplied definition differs from and overrides the implicit generic in package "stats": Formal arguments differ (in default values?))
Creating a new generic function for "cov2cor" in "externalVector"
** help
*** installing help indices
>>> Building/Updating help pages for package 'externalVector'
Formats: text html latex example chm
NAIndex-class text html latex chm
SubscriptList text html latex example chm
Subset text html latex chm
allIndex-class text html latex chm
allNA text html latex example chm
allocators text html latex chm
as.Rvector text html latex example chm
asEach text html latex example chm
defaultElement text html latex example chm
exprMatrix-class text html latex chm
externalAllocator-class text html latex chm
externalMatrix text html latex example chm
externalResource-class text html latex chm
externalStorage-class text html latex chm
externalVector-class text html latex chm
externalVector text html latex example chm
externalVectorWithStorage-class text html latex chm
gcAllocator-class text html latex example chm
getExternalStorage text html latex chm
getNativeStorageMethods text html latex chm
indirectExternalMatrix-class text html latex chm
indirectExternalVector-class text html latex chm
internalType text html latex chm
makeSlice text html latex example chm
matrixIndex-class text html latex chm
nativeStorageMethods-class text html latex chm
nativeStorageMethodsList-class text html latex chm
nonSlotAttributes text html latex chm
noneIndex-class text html latex chm
positiveIndex-class text html latex chm
rebind text html latex chm
setDimNames text html latex chm
setExternalStorageClass text html latex example chm
setVirtualMethod text html latex example chm
simpleStorage-class text html latex chm
sliceIndex-class text html latex chm
union-class text html latex chm
var text html latex example chm
vectorIndex-class text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\EXTERN~1.RCH\00_PKG~1\EXTERN~1\chm\externalVector.chm
Compile time: 0 minutes, 1 second
40 Topics
506 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\EXTERN~1.RCH\00_PKG~1\EXTERN~1\chm\externalVector.chm, 81,951 bytes
Compression decreased file by 254,525 bytes.
** building package indices ...
** MD5 sums
* DONE (externalVector)