fbat 1.8.0
The R Genetics Project
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/fbat | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL --preclean --library=fbat.buildbin-libdir fbat_1.8.0.tar.gz'
* Installing *source* package ‘fbat’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c FBAT.c -o FBAT.o
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -c missGFreq.f -o missGFreq.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c register.c -o register.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c FBAT.c -o FBAT.o
gfortran-4.2 -arch ppc -fPIC -g -O2 -Wall -c missGFreq.f -o missGFreq.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c register.c -o register.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c FBAT.c -o FBAT.o
gfortran-4.2 -arch ppc64 -fPIC -g -O2 -Wall -c missGFreq.f -o missGFreq.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c register.c -o register.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c FBAT.c -o FBAT.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -Wall -c missGFreq.f -o missGFreq.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c register.c -o register.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from package:utils :
combn
Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
** help
*** installing help indices
>>> Building/Updating help pages for package 'fbat'
Formats: text html latex example
checkMarkers text html latex example
checkMendelian text html latex example
fbat text html latex example
Note: removing empty section \details in file 'getFounders.Rd'
Note: removing empty section \note in file 'getFounders.Rd'
Note: removing empty section \examples in file 'getFounders.Rd'
Note: removing empty section \seealso in file 'getFounders.Rd'
getFounders text html latex
Note: removing empty section \details in file 'missGFreq.Rd'
missGFreq text html latex example
pedAFreq text html latex example
pedFlagHomo text html latex example
pedGFreq text html latex example
pedHardyWeinberg text html latex example
Note: removing empty section \note in file 'readHapMap.Rd'
Note: removing empty section \references in file 'readHapMap.Rd'
Note: removing empty section \examples in file 'readHapMap.Rd'
Note: removing empty section \seealso in file 'readHapMap.Rd'
readHapMap text html latex
Note: removing empty section \note in file 'readLink.Rd'
Note: removing empty section \references in file 'readLink.Rd'
Note: removing empty section \examples in file 'readLink.Rd'
Note: removing empty section \seealso in file 'readLink.Rd'
readLink text html latex
Note: removing empty section \details in file 'readPed.Rd'
Note: removing empty section \note in file 'readPed.Rd'
Note: removing empty section \examples in file 'readPed.Rd'
readPed text html latex
Note: removing empty section \source in file 'sampleInfoCEU.Rd'
Note: removing empty section \details in file 'sampleInfoCEU.Rd'
Note: removing empty section \references in file 'sampleInfoCEU.Rd'
sampleInfoCEU text html latex example
Note: removing empty section \source in file 'sampleInfoCHB.Rd'
Note: removing empty section \details in file 'sampleInfoCHB.Rd'
Note: removing empty section \references in file 'sampleInfoCHB.Rd'
sampleInfoCHB text html latex example
Note: removing empty section \source in file 'sampleInfoJPT.Rd'
Note: removing empty section \details in file 'sampleInfoJPT.Rd'
Note: removing empty section \references in file 'sampleInfoJPT.Rd'
sampleInfoJPT text html latex example
Note: removing empty section \source in file 'sampleInfoYRI.Rd'
Note: removing empty section \details in file 'sampleInfoYRI.Rd'
Note: removing empty section \references in file 'sampleInfoYRI.Rd'
sampleInfoYRI text html latex example
Note: removing empty section \value in file 'summaryPvalue.Rd'
summaryPvalue text html latex example
viewFlagHomo text html latex example
viewHW text html latex example
viewstat text html latex example
** building package indices ...
* DONE (fbat)