flagme 1.0.0
Mark Robinson
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flagme | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/flagme.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flagme/DESCRIPTION' ... OK
* this is package 'flagme' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flagme' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'flagme' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c dp.c -o dp.o
dp.c: In function 'dp':
dp.c:218: warning: 'cur_min' may be used uninitialized in this function
dp.c:217: warning: 'tb' may be used uninitialized in this function
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c init.c -o init.o
gcc -shared -s -o flagme.dll tmp.def dp.o init.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
Package SparseM (0.80) loaded.
To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from package:stats :
model.response
The following object(s) are masked from package:base :
backsolve,
chol
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: image
Warning in namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: image
Creating a new generic function for "plot" in "flagme"
** help
*** installing help indices
>>> Building/Updating help pages for package 'flagme'
Formats: text html latex example chm
addAMDISPeaks text html latex example chm
addChromaTOFPeaks text html latex example chm
betweenAlignment text html latex example chm
calcTimeDiffs text html latex example chm
clusterAlignment text html latex example chm
compress text html latex example chm
dp text html latex example chm
gatherInfo text html latex example chm
imputePeaks text html latex example chm
multipleAlignment text html latex example chm
normDotProduct text html latex example chm
parseChromaTOF text html latex example chm
parseELU text html latex example chm
peaksAlignment text html latex example chm
peaksDataset text html latex example chm
plot text html latex example chm
plotImage text html latex example chm
progressiveAlignment text html latex example chm
rmaFitUnit text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\FLAGME~1.RCH\00_PKG~1\flagme\chm\flagme.chm
Compile time: 0 minutes, 1 second
20 Topics
109 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\FLAGME~1.RCH\00_PKG~1\flagme\chm\flagme.chm, 43,345 bytes
Compression decreased file by 47,440 bytes.
** building package indices ...
** MD5 sums
* DONE (flagme)