gaga 1.4.0
David Rossell
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/gaga | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/gaga.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gaga/DESCRIPTION' ... OK
* this is package 'gaga' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaga' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'gaga' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c cseqdesma.c -o cseqdesma.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c cstat.c -o cstat.o
gcc -shared -s -o gaga.dll tmp.def cseqdesma.o cstat.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** help
*** installing help indices
>>> Building/Updating help pages for package 'gaga'
Formats: text html latex example chm
Note: removing empty section \examples in file 'checkfit.Rd'
Note: removing empty section \examples in file 'checkfit.Rd'
checkfit text html latex chm
classpred text html latex example chm
Note: removing empty section \examples in file 'dcgamma.Rd'
Note: removing empty section \examples in file 'dcgamma.Rd'
dcgamma text html latex chm
findgenes text html latex example chm
fitGG text html latex example chm
geneclus text html latex example chm
Note: removing empty section \examples in file 'getpar.Rd'
Note: removing empty section \examples in file 'getpar.Rd'
getpar text html latex chm
parest text html latex example chm
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Note: removing empty section \examples in file 'posmeansGG.Rd'
posmeansGG text html latex chm
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Note: removing empty section \examples in file 'powclasspred.Rd'
powclasspred text html latex chm
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Note: removing empty section \details in file 'print.gagahyp.Rd'
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simGG text html latex example chm
Note: removing empty section \examples in file 'simnewsamples.Rd'
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simnewsamples text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\GAGA~1.RCH\00_PKG~1\gaga\chm\gaga.chm
Compile time: 0 minutes, 0 seconds
16 Topics
73 Local links
15 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\GAGA~1.RCH\00_PKG~1\gaga\chm\gaga.chm, 39,327 bytes
Compression decreased file by 32,996 bytes.
** building package indices ...
** MD5 sums
* DONE (gaga)