gcrma 2.16.0
Z. Wu
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/gcrma | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/gcrma.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gcrma/DESCRIPTION' ... OK
* this is package 'gcrma' version '2.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gcrma' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
compute.affinities: no visible binding for global variable
'affinity.spline.coefs'
compute.affinities.nomm: no visible binding for global variable
'affinity.spline.coefs'
compute.affinities2: no visible binding for global variable
'affinity.spline.coefs'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'gcrma' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c baseProfile.c -o baseProfile.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c computeAffinities.c -o computeAffinities.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c postmean.c -o postmean.o
gcc -shared -s -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
** help
*** installing help indices
>>> Building/Updating help pages for package 'gcrma'
Formats: text html latex example chm
affinity.spline.coefs text html latex chm
bg.adjust.affinities text html latex chm
bg.adjust.gcrma text html latex example chm
bg.parameters.ns text html latex chm
compute.affinities text html latex chm
fast.bkg text html latex chm
gcrma text html latex example chm
Note: removing empty section \examples in file 'gcrma.engine.Rd'
Note: removing empty section \examples in file 'gcrma.engine.Rd'
gcrma.engine text html latex chm
Note: removing empty section \examples in file 'gcrma.engine2.Rd'
Note: removing empty section \examples in file 'gcrma.engine2.Rd'
gcrma.engine2 text html latex chm
getCDF text html latex chm
Note: removing empty section \examples in file 'justGCRMA.Rd'
Note: removing empty section \examples in file 'justGCRMA.Rd'
justGCRMA text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\GCRMA~1.RCH\00_PKG~1\gcrma\chm\gcrma.chm
Compile time: 0 minutes, 0 seconds
12 Topics
51 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\GCRMA~1.RCH\00_PKG~1\gcrma\chm\gcrma.chm, 32,642 bytes
Compression decreased file by 24,821 bytes.
** building package indices ...
** MD5 sums
* DONE (gcrma)