genefilter 1.24.3
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/genefilter | | Last Changed Rev: 42111 / Revision: 42512 | | Last Changed Date: 2009-10-01 16:07:35 -0700 (Thu, 01 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'genefilter/DESCRIPTION' ... OK
* preparing 'genefilter':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'genefilter' ...
** libs
making DLL ...
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c half_range_mode.cpp -o half_range_mode.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c init.c -o init.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c nd.c -o nd.o
nd.c: In function 'gf_dist_binary':
nd.c:242: warning: unused variable 'w2'
nd.c:242: warning: unused variable 'w1'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC_c':
pAUC.c:73: warning: operation on 'ta' may be undefined
pAUC.c:76: warning: operation on 'ta' may be undefined
pAUC.c:79: warning: operation on 'ta' may be undefined
pAUC.c: In function 'pAUC':
pAUC.c:141: warning: suggest parentheses around comparison in operand of |
pAUC.c:123: warning: unused variable 'i'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function 'ROCpAUC_c':
rowPAUCs.c:97: warning: operation on 'ta' may be undefined
rowPAUCs.c:100: warning: operation on 'ta' may be undefined
rowPAUCs.c:103: warning: operation on 'ta' may be undefined
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c rowttests.c -o rowttests.o
gfortran -O3 -c ttest.f -o ttest.o
g++ -shared -s -o genefilter.dll tmp.def half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "plot" in "genefilter"
** help
*** installing help indices
>>> Building/Updating help pages for package 'genefilter'
Formats: text html latex example chm
Anova text html latex example chm
allNA text html latex example chm
coxfilter text html latex example chm
cv text html latex example chm
dist2 text html latex example chm
eSetFilter text html latex example chm
filterfun text html latex example chm
findLargest text html latex example chm
gapFilter text html latex example chm
genefilter text html latex example chm
genefinder text html latex example chm
genescale text html latex example chm
half.range.mode text html latex example chm
kOverA text html latex example chm
maxA text html latex example chm
nsFilter text html latex example chm
pOverA text html latex example chm
rowFtests text html latex example chm
rowROC-class text html latex example chm
rowSds text html latex example chm
rowpAUCs text html latex example chm
shorth text html latex example chm
tdata text html latex example chm
ttest text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\meat\genefilter\chm\genefilter.chm
Compile time: 0 minutes, 1 second
25 Topics
127 Local links
2 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\meat\genefilter\chm\genefilter.chm, 61,791 bytes
Compression decreased file by 56,274 bytes.
** building package indices ...
** MD5 sums
* DONE (genefilter)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'genefilter_1.24.3.tar.gz'